myRT

myRT report for GCA_000790705.1_AZPAE14886

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Seq: JTTC01000059.1 (37879 bp)
Overview 1 RT 1: 2-2923 bp Neighborhood of RT #1 [2, 2923] RVT-GII GIIM Feature: gene Location: 2-208 bp Feature: gene Location: 744-2012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957-1 61 4 bp Feature: domain Description: GIIM Note: maturase Location: 1692-1914 bp Feature: domain Description: GIIM Note: maturase Location: 1 692-1 91 4 bp Feature: gene Location: 2162-2560 bp Feature: gene Location: 2744-2923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JTTC01000044.1 (141234 bp)
Overview 1 RT 1: 56110-66843 bp 2 RT 2: 83101-91921 bp Neighborhood of RT #1 [56110, 66845] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83101, 91950] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 56110-56325 bp Feature: domain Description: NERD Location: 56137-56260 bp Feature: domain Description: NERD Location: 56137-562 60 bp Feature: gene Location: 56538-57659 bp Feature: domain Description: COG3177 Location: 56556-57648 bp Feature: domain Description: COG3177 Location: 56556-57648 bp Feature: gene Location: 58382-60067 bp Feature: domain Description: RVT_N Location: 58439-58679 bp Feature: domain Description: RVT_N Location: 58439-58679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58727-59363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5872 7-59363 bp Feature: domain Description: GIIM Note: maturase Location: 59417-59648 bp Feature: domain Description: GIIM Note: maturase Location: 59417-59648 bp Feature: domain Description: HNH Note: nucleases Location: 59900-60038 bp Feature: domain Description: HNH Note: nucleases Location: 59900-60038 bp Feature: gene Location: 61148-64885 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61256-61913 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 612 56-61913 bp Feature: domain Description: PRK09776 Location: 62126-62597 bp Feature: domain Description: PRK09776 Location: 62 12 6-62 597 bp Feature: domain Description: PAS Location: 62654-63179 bp Feature: domain Description: PAS Location: 62 654-63179 bp Feature: domain Description: PRK10060 Location: 63191-64835 bp Feature: domain Description: PRK10060 Location: 63191-64835 bp Feature: gene Location: 64992-66845 bp Feature: domain Description: PRK05658 Location: 65004-66843 bp Feature: domain Description: PRK05658 Location: 65004-66843 bp Feature: gene Location: 83101-84315 bp Feature: domain Description: PRK10770 Location: 83113-84307 bp Feature: domain Description: PRK10770 Location: 83113-84307 bp Feature: gene Location: 84374-87145 bp Feature: domain Description: LptD Location: 84569-87131 bp Feature: domain Description: LptD Location: 84569-87131 bp Feature: gene Location: 87278-88990 bp Feature: domain Description: RVT_N Location: 87335-87578 bp Feature: domain Description: RVT_N Location: 87335-87578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87623-88259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8762 3-882 59 bp Feature: domain Description: YkfC Location: 88469-88619 bp Feature: domain Description: YkfC Location: 88469-88619 bp Feature: domain Description: HNH Note: nucleases Location: 88796-88934 bp Feature: domain Description: HNH Note: nucleases Location: 88796-88934 bp Feature: gene Location: 90263-91279 bp Feature: domain Description: COG3178 Location: 90266-91265 bp Feature: domain Description: COG3178 Location: 902 66-912 65 bp Feature: gene Location: 91276-91950 bp Feature: domain Description: NTP_transferase_like_1 Location: 91282-91921 bp Feature: domain Description: NTP_transferase_like_1 Location: 912 82 -9192 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTTC01000046.1 (35907 bp)
Overview 1 RT 1: 25775-33946 bp Neighborhood of RT #1 [25775, 34140] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25775-27646 bp Feature: domain Description: DUF262 Location: 25823-26591 bp Feature: domain Description: DUF262 Location: 25823 -26591 bp Feature: gene Location: 27650-28759 bp Feature: domain Description: YeeA Location: 27845-28625 bp Feature: domain Description: YeeA Location: 27845-28625 bp Feature: gene Location: 29427-32447 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29922-30393 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29922-3 03 93 bp Feature: gene Location: 32444-33001 bp Feature: gene Location: 33001-34140 bp Feature: domain Description: AAA_21 Location: 33073-33142 bp Feature: domain Description: AAA_21 Location: 3 3 073 -3 3 142 bp Feature: domain Description: AAA_21 Location: 33616-33946 bp Feature: domain Description: AAA_21 Location: 3 3 616-3 3 946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)