myRT

myRT report for GCA_000790725.1_AZPAE14887

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Seq: JTTB01000103.1 (2501 bp)
Overview 1 RT 1: 145-2498 bp Neighborhood of RT #1 [145, 2498] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 145-1863 bp Feature: RT Description: RVT_N Location: 202-439 bp Feature: RT Description: RVT_N Location: 202-439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490-1141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490-1 1 41 bp Feature: domain Description: GIIM Note: maturase Location: 1195-1426 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 95-1 426 bp Feature: domain Description: HNHc Note: nucleases Location: 1660-1816 bp Feature: domain Description: HNHc Note: nucleases Location: 1 660-1 81 6 bp Feature: gene Location: 2133-2261 bp Feature: gene Location: 2292-2498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JTTB01000024.1 (275911 bp)
Overview 1 RT 1: 193616-204350 bp Neighborhood of RT #1 [193616, 204352] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 193616-193951 bp Feature: domain Description: NERD Location: 193715-193886 bp Feature: domain Description: NERD Location: 193715-193886 bp Feature: gene Location: 194044-195165 bp Feature: domain Description: COG3177 Location: 194062-195154 bp Feature: domain Description: COG3177 Location: 194062 -195154 bp Feature: gene Location: 195889-197574 bp Feature: RT Description: RVT_N Location: 195946-196186 bp Feature: RT Description: RVT_N Location: 195946-196186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196234-196870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1962 34-196870 bp Feature: domain Description: GIIM Note: maturase Location: 196924-197155 bp Feature: domain Description: GIIM Note: maturase Location: 19692 4-197155 bp Feature: domain Description: HNH Note: nucleases Location: 197407-197545 bp Feature: domain Description: HNH Note: nucleases Location: 197407-197545 bp Feature: gene Location: 198655-202392 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 198763-199420 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 198763-19942 0 bp Feature: domain Description: PRK09776 Location: 199633-200104 bp Feature: domain Description: PRK09776 Location: 199633-2 00104 bp Feature: domain Description: PAS Location: 200164-200686 bp Feature: domain Description: PAS Location: 2 00164-2 00686 bp Feature: domain Description: PRK10060 Location: 200695-202342 bp Feature: domain Description: PRK10060 Location: 2 00695-2 02 342 bp Feature: gene Location: 202499-204352 bp Feature: domain Description: PRK05658 Location: 202511-204350 bp Feature: domain Description: PRK05658 Location: 2 02 511-2 04350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)