myRT

myRT report for GCA_000790785.1_AZPAE14888

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Seq: JTTA01000040.1 (38151 bp)
Overview 1 RT 1: 32351-37853 bp Neighborhood of RT #1 [32351, 38149] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 32351-33895 bp Feature: domain Description: CHD Location: 32567-32981 bp Feature: domain Description: CHD Location: 32567-32981 bp Feature: domain Description: CHD Location: 33209-33698 bp Feature: domain Description: CHD Location: 33209-33698 bp Feature: gene Location: 34979-35158 bp Feature: gene Location: 35890-37158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36103-36760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 03-36760 bp Feature: domain Description: GIIM Note: maturase Location: 36838-37060 bp Feature: domain Description: GIIM Note: maturase Location: 36838-37060 bp Feature: gene Location: 37547-38149 bp Feature: domain Description: DUF772 Location: 37658-37853 bp Feature: domain Description: DUF772 Location: 37658-37853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: JTTA01000018.1 (234332 bp)
Overview 1 RT 1: 149369-159672 bp 2 RT 2: 175931-184789 bp Neighborhood of RT #1 [149369, 159674] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [175931, 184818] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 149369-150490 bp Feature: domain Description: COG3177 Location: 149387-150479 bp Feature: domain Description: COG3177 Location: 149387-150479 bp Feature: gene Location: 151211-152896 bp Feature: RT Description: RVT_N Location: 151268-151508 bp Feature: RT Description: RVT_N Location: 1512 68-151508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151556-152192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151556-152 192 bp Feature: domain Description: GIIM Note: maturase Location: 152246-152477 bp Feature: domain Description: GIIM Note: maturase Location: 152 2 46-152 477 bp Feature: domain Description: HNH Note: nucleases Location: 152729-152867 bp Feature: domain Description: HNH Note: nucleases Location: 152 72 9-152 867 bp Feature: gene Location: 153977-157714 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 154085-154742 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 154085-154742 bp Feature: domain Description: PRK09776 Location: 154955-155426 bp Feature: domain Description: PRK09776 Location: 154955-15542 6 bp Feature: domain Description: PAS Location: 155471-156008 bp Feature: domain Description: PAS Location: 155471-156008 bp Feature: domain Description: PRK10060 Location: 156017-157664 bp Feature: domain Description: PRK10060 Location: 156017-157664 bp Feature: gene Location: 157821-159674 bp Feature: domain Description: PRK05658 Location: 157833-159672 bp Feature: domain Description: PRK05658 Location: 157833-159672 bp Feature: gene Location: 175931-177145 bp Feature: domain Description: PRK10770 Location: 175943-177137 bp Feature: domain Description: PRK10770 Location: 175943-177137 bp Feature: gene Location: 177204-180014 bp Feature: domain Description: LptD Location: 177399-180000 bp Feature: domain Description: LptD Location: 177399-180000 bp Feature: gene Location: 180147-181859 bp Feature: RT Description: RVT_N Location: 180204-180447 bp Feature: RT Description: RVT_N Location: 1802 04-180447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180492-181125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180492 -18112 5 bp Feature: domain Description: YkfC Location: 181338-181488 bp Feature: domain Description: YkfC Location: 181338-181488 bp Feature: domain Description: HNH Note: nucleases Location: 181665-181803 bp Feature: domain Description: HNH Note: nucleases Location: 181665-181803 bp Feature: gene Location: 183131-184147 bp Feature: domain Description: COG3178 Location: 183134-184133 bp Feature: domain Description: COG3178 Location: 183134-184133 bp Feature: gene Location: 184144-184818 bp Feature: domain Description: NTP_transferase_like_1 Location: 184150-184789 bp Feature: domain Description: NTP_transferase_like_1 Location: 184150-184789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTTA01000066.1 (12284 bp)
Overview 1 RT 1: 126-3100 bp Neighborhood of RT #1 [126, 3129] RVT-GII GIIM DUF3085 Feature: gene Location: 126-770 bp Feature: gene Location: 363-1562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 528-1143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 528-1143 bp Feature: domain Description: GIIM Note: maturase Location: 1200-1416 bp Feature: domain Description: GIIM Note: maturase Location: 1200-1416 bp Feature: gene Location: 1902-2699 bp Feature: gene Location: 2764-3129 bp Feature: domain Description: DUF3085 Location: 2830-3100 bp Feature: domain Description: DUF3 085 Location: 283 0-3 100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3085 (pfam11284), RVT-GII, GIIM (pfam08388)

Seq: JTTA01000041.1 (371683 bp)
Overview 1 RT 1: 171842-177718 bp Neighborhood of RT #1 [171842, 177762] DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG0389 SF2_C_SNF resist_ArsH Feature: gene Location: 171842-172147 bp Feature: gene Location: 172284-173339 bp Feature: domain Description: DEXHc_Snf Location: 172503-172761 bp Feature: domain Description: DEXHc_Snf Location: 172503-172761 bp Feature: gene Location: 173936-175654 bp Feature: RT Description: RVT_N Location: 173993-174230 bp Feature: RT Description: RVT_N Location: 173993-174 230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174281-174932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174 281-174 932 bp Feature: domain Description: GIIM Note: maturase Location: 174986-175217 bp Feature: domain Description: GIIM Note: maturase Location: 174 986-175217 bp Feature: domain Description: HNHc Note: nucleases Location: 175451-175607 bp Feature: domain Description: HNHc Note: nucleases Location: 1754 51-175607 bp Feature: gene Location: 175722-176981 bp Feature: domain Description: KOG0389 Location: 175752-175872 bp Feature: domain Description: KOG0389 Location: 175752-175872 bp Feature: domain Description: SF2_C_SNF Location: 176421-176817 bp Feature: domain Description: SF2_C_SNF Location: 1764 21-176817 bp Feature: gene Location: 177040-177762 bp Feature: domain Description: resist_ArsH Location: 177064-177718 bp Feature: domain Description: resist_ArsH Location: 177064 -177718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), resist_ArsH (TIGR02690)