myRT

myRT report for GCA_000791225.1_AZPAE14924

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Seq: JTRR01000042.1 (141345 bp)
Overview 1 RT 1: 56549-66855 bp 2 RT 2: 83113-91951 bp Neighborhood of RT #1 [56549, 66857] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83113, 91980] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 56549-57670 bp Feature: domain Description: COG3177 Location: 56567-57659 bp Feature: domain Description: COG31 77 Location: 56567-57659 bp Feature: gene Location: 57929-58066 bp Feature: gene Location: 58394-60079 bp Feature: domain Description: RVT_N Location: 58451-58691 bp Feature: domain Description: RVT_N Location: 58451 -58691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58739-59375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58739-59375 bp Feature: domain Description: GIIM Note: maturase Location: 59429-59660 bp Feature: domain Description: GIIM Note: maturase Location: 59429-59660 bp Feature: domain Description: HNH Note: nucleases Location: 59912-60050 bp Feature: domain Description: HNH Note: nucleases Location: 5991 2-60050 bp Feature: gene Location: 61160-64897 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61268-61925 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61 268-61 925 bp Feature: domain Description: PRK09776 Location: 62138-62609 bp Feature: domain Description: PRK09776 Location: 621 38-62609 bp Feature: domain Description: PAS Location: 62666-63191 bp Feature: domain Description: PAS Location: 62666-631 91 bp Feature: domain Description: PRK10060 Location: 63200-64847 bp Feature: domain Description: PRK1 0060 Location: 63200-64847 bp Feature: gene Location: 65004-66857 bp Feature: domain Description: PRK05658 Location: 65016-66855 bp Feature: domain Description: PRK05658 Location: 6501 6-66855 bp Feature: gene Location: 83113-84327 bp Feature: domain Description: PRK10770 Location: 83125-84319 bp Feature: domain Description: PRK1 0770 Location: 831 25-8431 9 bp Feature: gene Location: 84386-87175 bp Feature: domain Description: LptD Location: 84581-87161 bp Feature: domain Description: LptD Location: 84581 -871 61 bp Feature: gene Location: 87308-89020 bp Feature: domain Description: RVT_N Location: 87365-87608 bp Feature: domain Description: RVT_N Location: 87365-87608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87653-88289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87653-88289 bp Feature: domain Description: YkfC Location: 88499-88649 bp Feature: domain Description: YkfC Location: 88499-88649 bp Feature: domain Description: HNH Note: nucleases Location: 88826-88964 bp Feature: domain Description: HNH Note: nucleases Location: 88826-88964 bp Feature: gene Location: 90293-91309 bp Feature: domain Description: COG3178 Location: 90296-91295 bp Feature: domain Description: COG31 78 Location: 90296-91 295 bp Feature: gene Location: 91306-91980 bp Feature: domain Description: NTP_transferase_like_1 Location: 91312-91951 bp Feature: domain Description: NTP_transferase_like_1 Location: 91 31 2-91 951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTRR01000035.1 (37922 bp)
Overview 1 RT 1: 3-2924 bp Neighborhood of RT #1 [3, 2924] RVT-GII GIIM Feature: gene Location: 3-209 bp Feature: gene Location: 745-2013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1615 bp Feature: domain Description: GIIM Note: maturase Location: 1693-1915 bp Feature: domain Description: GIIM Note: maturase Location: 1693-1915 bp Feature: gene Location: 2163-2561 bp Feature: gene Location: 2745-2924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JTRR01000038.1 (33200 bp)
Overview 1 RT 1: 78-3642 bp Neighborhood of RT #1 [78, 3806] RVT-UG2 PRK06333 HxlR Feature: gene Location: 78-1424 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 327-1113 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3 27-1113 bp Feature: gene Location: 1923-3191 bp Feature: domain Description: PRK06333 Location: 1929-3186 bp Feature: domain Description: PRK063 3 3 Location: 1929-3 186 bp Feature: gene Location: 3300-3806 bp Feature: domain Description: HxlR Location: 3324-3642 bp Feature: domain Description: HxlR Location: 3 3 24-3 642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, PRK06333 (beta-ketoacyl-ACP synthase), HxlR (pfam01638)