myRT

myRT report for GCA_000791685.1_AZPAE14956

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Seq: JTQL01000229.1 (9949 bp)
Overview 1 RT 1: 1-4121 bp Neighborhood of RT #1 [1, 4121] RVT_N RVT-GII GIIM HNHc KOG0387 SF2_C_SNF Feature: gene Location: 1-243 bp Feature: gene Location: 274-402 bp Feature: gene Location: 672-2390 bp Feature: RT Description: RVT_N Location: 729-966 bp Feature: RT Description: RVT_N Location: 729-966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1017-1668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 7-1 668 bp Feature: domain Description: GIIM Note: maturase Location: 1722-1953 bp Feature: domain Description: GIIM Note: maturase Location: 1 722-1 953 bp Feature: domain Description: HNHc Note: nucleases Location: 2187-2343 bp Feature: domain Description: HNHc Note: nucleases Location: 21 87-2343 bp Feature: gene Location: 2458-3717 bp Feature: domain Description: KOG0387 Location: 2497-2623 bp Feature: domain Description: KOG0387 Location: 2497-2623 bp Feature: domain Description: SF2_C_SNF Location: 3172-3553 bp Feature: domain Description: SF2_C_SNF Location: 31 72-3553 bp Feature: gene Location: 3819-4121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0387 (KOG0387, Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JTQL01000009.1 (159173 bp)
Overview 1 RT 1: 62688-73938 bp Neighborhood of RT #1 [62688, 73940] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 62688-63458 bp Feature: domain Description: NERD Location: 62787-63120 bp Feature: domain Description: NERD Location: 62 787-6312 0 bp Feature: gene Location: 63629-64750 bp Feature: domain Description: COG3177 Location: 63647-64739 bp Feature: domain Description: COG3177 Location: 63647-64739 bp Feature: gene Location: 65476-67161 bp Feature: RT Description: RVT_N Location: 65533-65773 bp Feature: RT Description: RVT_N Location: 65533-65773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65821-66457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6582 1-66457 bp Feature: domain Description: GIIM Note: maturase Location: 66511-66742 bp Feature: domain Description: GIIM Note: maturase Location: 66511-66742 bp Feature: domain Description: HNH Note: nucleases Location: 66994-67132 bp Feature: domain Description: HNH Note: nucleases Location: 66994-67132 bp Feature: gene Location: 68243-71980 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 68351-69008 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 68351-69008 bp Feature: domain Description: PRK09776 Location: 69221-69692 bp Feature: domain Description: PRK09776 Location: 692 2 1-69692 bp Feature: domain Description: PAS Location: 69773-70274 bp Feature: domain Description: PAS Location: 69773-702 74 bp Feature: domain Description: PRK10060 Location: 70283-71930 bp Feature: domain Description: PRK10060 Location: 702 83-71930 bp Feature: gene Location: 72087-73940 bp Feature: domain Description: PRK05658 Location: 72099-73938 bp Feature: domain Description: PRK05658 Location: 72 099-73938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)