myRT

myRT report for GCA_000791735.1_AZPAE14959

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Seq: JTQI01000013.1 (245111 bp)
Overview 1 RT 1: 148120-158428 bp 2 RT 2: 174687-183536 bp Neighborhood of RT #1 [148120, 158430] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [174687, 183565] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 148120-149241 bp Feature: domain Description: COG3177 Location: 148138-149230 bp Feature: domain Description: COG31 77 Location: 1 481 38-1 49230 bp Feature: gene Location: 149503-149664 bp Feature: gene Location: 149967-151652 bp Feature: RT Description: RVT_N Location: 150024-150264 bp Feature: RT Description: RVT_N Location: 1 50024-1 50264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150312-150948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5031 2-1 50948 bp Feature: domain Description: GIIM Note: maturase Location: 151002-151233 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 002-1 51 233 bp Feature: domain Description: HNH Note: nucleases Location: 151485-151623 bp Feature: domain Description: HNH Note: nucleases Location: 1 51 485-1 51 623 bp Feature: gene Location: 152733-156470 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 152841-153498 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 52841 -1 53498 bp Feature: domain Description: PRK09776 Location: 153711-154182 bp Feature: domain Description: PRK09776 Location: 1 5371 1 -1 541 82 bp Feature: domain Description: PAS Location: 154239-154764 bp Feature: domain Description: PAS Location: 1 54239-1 54764 bp Feature: domain Description: PRK10060 Location: 154773-156420 bp Feature: domain Description: PRK1 0060 Location: 1 54773-1 56420 bp Feature: gene Location: 156577-158430 bp Feature: domain Description: PRK05658 Location: 156589-158428 bp Feature: domain Description: PRK05658 Location: 1 56589-1 58428 bp Feature: gene Location: 174687-175901 bp Feature: domain Description: PRK10770 Location: 174699-175893 bp Feature: domain Description: PRK1 0770 Location: 1 74699-1 75893 bp Feature: gene Location: 175960-178761 bp Feature: domain Description: LptD Location: 176155-178747 bp Feature: domain Description: LptD Location: 1 761 55-1 78747 bp Feature: gene Location: 178894-180606 bp Feature: RT Description: RVT_N Location: 178951-179194 bp Feature: RT Description: RVT_N Location: 1 78951 -1 791 94 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179239-179875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 79239-1 79875 bp Feature: domain Description: YkfC Location: 180085-180235 bp Feature: domain Description: YkfC Location: 1 80085-1 80235 bp Feature: domain Description: HNH Note: nucleases Location: 180412-180550 bp Feature: domain Description: HNH Note: nucleases Location: 1 8041 2-1 80550 bp Feature: gene Location: 181878-182894 bp Feature: domain Description: COG3178 Location: 181881-182880 bp Feature: domain Description: COG31 78 Location: 1 81 881 -1 82880 bp Feature: gene Location: 182891-183565 bp Feature: domain Description: NTP_transferase_like_1 Location: 182897-183536 bp Feature: domain Description: NTP_transferase_like_1 Location: 1 82897-1 83536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)