myRT

myRT report for GCA_000791805.1_AZPAE14962

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Seq: JTQF01000013.1 (348194 bp)
Overview 1 RT 1: 209058-219298 bp 2 RT 2: 235557-244406 bp Neighborhood of RT #1 [209058, 219300] SmaI RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [235557, 244435] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 209058-209348 bp Feature: gene Location: 209673-210401 bp Feature: domain Description: SmaI Location: 209679-210384 bp Feature: domain Description: SmaI Location: 209679-21 0384 bp Feature: gene Location: 210837-212522 bp Feature: RT Description: RVT_N Location: 210894-211134 bp Feature: RT Description: RVT_N Location: 21 0894-21 1 1 34 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211182-211818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 1 82-21 1 81 8 bp Feature: domain Description: GIIM Note: maturase Location: 211872-212103 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 872-21 21 03 bp Feature: domain Description: HNH Note: nucleases Location: 212355-212493 bp Feature: domain Description: HNH Note: nucleases Location: 21 2355-21 2493 bp Feature: gene Location: 213603-217340 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 213711-214368 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 21 371 1 -21 4368 bp Feature: domain Description: PRK09776 Location: 214581-215052 bp Feature: domain Description: PRK09776 Location: 21 4581 -21 5052 bp Feature: domain Description: PAS Location: 215109-215634 bp Feature: domain Description: PAS Location: 21 51 09-21 5634 bp Feature: domain Description: PRK10060 Location: 215643-217290 bp Feature: domain Description: PRK1 0060 Location: 21 5643-21 7290 bp Feature: gene Location: 217447-219300 bp Feature: domain Description: PRK05658 Location: 217459-219298 bp Feature: domain Description: PRK05658 Location: 21 7459-21 9298 bp Feature: gene Location: 235557-236771 bp Feature: domain Description: PRK10770 Location: 235569-236763 bp Feature: domain Description: PRK1 0770 Location: 235569-236763 bp Feature: gene Location: 236830-239631 bp Feature: domain Description: LptD Location: 237025-239617 bp Feature: domain Description: LptD Location: 237025-23961 7 bp Feature: gene Location: 239764-241476 bp Feature: RT Description: RVT_N Location: 239821-240064 bp Feature: RT Description: RVT_N Location: 239821 -240064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240109-240742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2401 09-240742 bp Feature: domain Description: YkfC Location: 240955-241105 bp Feature: domain Description: YkfC Location: 240955-241 1 05 bp Feature: domain Description: HNH Note: nucleases Location: 241282-241420 bp Feature: domain Description: HNH Note: nucleases Location: 241 282-241 420 bp Feature: gene Location: 242748-243764 bp Feature: domain Description: COG3178 Location: 242751-243750 bp Feature: domain Description: COG31 78 Location: 242751 -243750 bp Feature: gene Location: 243761-244435 bp Feature: domain Description: NTP_transferase_like_1 Location: 243767-244406 bp Feature: domain Description: NTP_transferase_like_1 Location: 243767-244406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmaI (pfam17411), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)