myRT

myRT report for GCA_000792065.1_AZPAE14973

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Seq: JTPV01000044.1 (258060 bp)
Overview 1 RT 1: 30933-38040 bp Neighborhood of RT #1 [30933, 38156] HyuA Hydantoinase_B RVT-GII GIIM Porin_O_P Feature: gene Location: 30933-33023 bp Feature: domain Description: HyuA Location: 30948-33003 bp Feature: domain Description: HyuA Location: 30948-33003 bp Feature: gene Location: 33059-34804 bp Feature: domain Description: Hydantoinase_B Location: 33074-34658 bp Feature: domain Description: Hydantoinase_B Location: 33074-34658 bp Feature: gene Location: 35105-36382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35366-35981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35366-35981 bp Feature: domain Description: GIIM Note: maturase Location: 36035-36263 bp Feature: domain Description: GIIM Note: maturase Location: 36035-36263 bp Feature: gene Location: 36318-36797 bp Feature: gene Location: 36978-38156 bp Feature: domain Description: Porin_O_P Location: 37203-38040 bp Feature: domain Description: Porin_O_P Location: 37203-38040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HyuA (COG0145), Hydantoinase_B (pfam02538), RVT-GII, GIIM (pfam08388), Porin_O_P (pfam07396)

Seq: JTPV01000108.1 (2429 bp)
Overview 1 RT 1: 91-2426 bp Neighborhood of RT #1 [91, 2426] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 91-1809 bp Feature: domain Description: RVT_N Location: 148-385 bp Feature: domain Description: RVT_N Location: 148-385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436-1087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436-1087 bp Feature: domain Description: GIIM Note: maturase Location: 1141-1372 bp Feature: domain Description: GIIM Note: maturase Location: 1141-1372 bp Feature: domain Description: HNHc Note: nucleases Location: 1606-1762 bp Feature: domain Description: HNHc Note: nucleases Location: 1606-1762 bp Feature: gene Location: 2079-2207 bp Feature: gene Location: 2238-2426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JTPV01000056.1 (23920 bp)
Overview 1 RT 1: 15547-19926 bp Neighborhood of RT #1 [15547, 19926] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 15547-16374 bp Feature: domain Description: ABC_phnC Location: 15577-16291 bp Feature: domain Description: ABC_phnC Location: 15577-16291 bp Feature: gene Location: 16717-17358 bp Feature: domain Description: DUF772 Location: 16867-17062 bp Feature: domain Description: DUF772 Location: 16867-17062 bp Feature: gene Location: 17747-19015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17960-18617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17960-18617 bp Feature: domain Description: GIIM Note: maturase Location: 18695-18917 bp Feature: domain Description: GIIM Note: maturase Location: 18695-18917 bp Feature: gene Location: 19165-19563 bp Feature: gene Location: 19747-19926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: JTPV01000020.1 (231168 bp)
Overview 1 RT 1: 146055-156361 bp 2 RT 2: 172619-181456 bp Neighborhood of RT #1 [146055, 156363] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [172619, 181485] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 146055-147176 bp Feature: domain Description: COG3177 Location: 146073-147165 bp Feature: domain Description: COG3177 Location: 14 6073-14 7165 bp Feature: gene Location: 147435-147572 bp Feature: gene Location: 147900-149585 bp Feature: domain Description: RVT_N Location: 147957-148197 bp Feature: domain Description: RVT_N Location: 14 7957-14 8197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148245-148881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 824 5-14 8881 bp Feature: domain Description: GIIM Note: maturase Location: 148935-149166 bp Feature: domain Description: GIIM Note: maturase Location: 14 8935-14 9166 bp Feature: domain Description: HNH Note: nucleases Location: 149418-149556 bp Feature: domain Description: HNH Note: nucleases Location: 14 94 18-14 9556 bp Feature: gene Location: 150666-154403 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 150774-151431 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 150774 -1514 31 bp Feature: domain Description: PRK09776 Location: 151644-152115 bp Feature: domain Description: PRK09776 Location: 15164 4 -152115 bp Feature: domain Description: PAS Location: 152205-152697 bp Feature: domain Description: PAS Location: 152205-152697 bp Feature: domain Description: PRK10060 Location: 152706-154353 bp Feature: domain Description: PRK10060 Location: 152706-154 353 bp Feature: gene Location: 154510-156363 bp Feature: domain Description: PRK05658 Location: 154522-156361 bp Feature: domain Description: PRK05658 Location: 154 522-156361 bp Feature: gene Location: 172619-173833 bp Feature: domain Description: PRK10770 Location: 172631-173825 bp Feature: domain Description: PRK10770 Location: 172631-173825 bp Feature: gene Location: 173892-176681 bp Feature: domain Description: LptD Location: 174087-176667 bp Feature: domain Description: LptD Location: 174 087-176667 bp Feature: gene Location: 176814-178526 bp Feature: domain Description: RVT_N Location: 176871-177114 bp Feature: domain Description: RVT_N Location: 176871-177114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177159-177795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177159-177795 bp Feature: domain Description: YkfC Location: 178005-178155 bp Feature: domain Description: YkfC Location: 178005-178155 bp Feature: domain Description: HNH Note: nucleases Location: 178332-178470 bp Feature: domain Description: HNH Note: nucleases Location: 178332-1784 70 bp Feature: gene Location: 179798-180814 bp Feature: domain Description: COG3178 Location: 179801-180800 bp Feature: domain Description: COG3178 Location: 179801-180800 bp Feature: gene Location: 180811-181485 bp Feature: domain Description: NTP_transferase_like_1 Location: 180817-181456 bp Feature: domain Description: NTP_transferase_like_1 Location: 180817-1814 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTPV01000076.1 (81068 bp)
Overview 1 RT 1: 34653-37312 bp Neighborhood of RT #1 [34653, 37338] RVT-UG17 HipB Feature: gene Location: 34653-36017 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 34881-35484 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 34881-35 484 bp Feature: gene Location: 36546-36971 bp Feature: gene Location: 37057-37338 bp Feature: domain Description: HipB Location: 37078-37312 bp Feature: domain Description: HipB Location: 37078-37312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, HipB (COG1396)