myRT

myRT report for GCA_000792305.1_AZPAE14983

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Seq: JTPL01000026.1 (55426 bp)
Overview 1 RT 1: 34327-38623 bp Neighborhood of RT #1 [34327, 38706] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 34327-34506 bp Feature: gene Location: 34690-35088 bp Feature: gene Location: 35238-36506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35451-36108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35451 -361 08 bp Feature: domain Description: GIIM Note: maturase Location: 36186-36408 bp Feature: domain Description: GIIM Note: maturase Location: 361 86-36408 bp Feature: gene Location: 36895-37536 bp Feature: domain Description: DUF772 Location: 37045-37240 bp Feature: domain Description: DUF772 Location: 37045-37240 bp Feature: gene Location: 37879-38706 bp Feature: domain Description: ABC_phnC Location: 37909-38623 bp Feature: domain Description: ABC_phnC Location: 37909-38623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: JTPL01000006.1 (281949 bp)
Overview 1 RT 1: 196824-207557 bp 2 RT 2: 223815-232635 bp Neighborhood of RT #1 [196824, 207559] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [223815, 232664] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 196824-197039 bp Feature: domain Description: NERD Location: 196851-196974 bp Feature: domain Description: NERD Location: 196851-196974 bp Feature: gene Location: 197252-198373 bp Feature: domain Description: COG3177 Location: 197270-198362 bp Feature: domain Description: COG3177 Location: 1972 70-198362 bp Feature: gene Location: 199096-200781 bp Feature: domain Description: RVT_N Location: 199153-199393 bp Feature: domain Description: RVT_N Location: 199153-199393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199441-200077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199441-2 00077 bp Feature: domain Description: GIIM Note: maturase Location: 200131-200362 bp Feature: domain Description: GIIM Note: maturase Location: 2 00131-2 00362 bp Feature: domain Description: HNH Note: nucleases Location: 200614-200752 bp Feature: domain Description: HNH Note: nucleases Location: 2 00614-2 00752 bp Feature: gene Location: 201862-205599 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 201970-202627 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 01970-2 02 62 7 bp Feature: domain Description: PRK09776 Location: 202840-203311 bp Feature: domain Description: PRK09776 Location: 2 02 840-2 03311 bp Feature: domain Description: PAS Location: 203368-203893 bp Feature: domain Description: PAS Location: 2 03368-2 03893 bp Feature: domain Description: PRK10060 Location: 203905-205549 bp Feature: domain Description: PRK10060 Location: 2 03905-2 05549 bp Feature: gene Location: 205706-207559 bp Feature: domain Description: PRK05658 Location: 205718-207557 bp Feature: domain Description: PRK05658 Location: 2 05718-2 07557 bp Feature: gene Location: 223815-225029 bp Feature: domain Description: PRK10770 Location: 223827-225021 bp Feature: domain Description: PRK10770 Location: 2 2 382 7-2 2 502 1 bp Feature: gene Location: 225088-227859 bp Feature: domain Description: LptD Location: 225283-227845 bp Feature: domain Description: LptD Location: 2 2 52 83-2 2 7845 bp Feature: gene Location: 227992-229704 bp Feature: domain Description: RVT_N Location: 228049-228292 bp Feature: domain Description: RVT_N Location: 2 2 8049-2 2 82 92 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228337-228973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 8337-2 2 8973 bp Feature: domain Description: YkfC Location: 229183-229333 bp Feature: domain Description: YkfC Location: 2 2 9183-2 2 9333 bp Feature: domain Description: HNH Note: nucleases Location: 229510-229648 bp Feature: domain Description: HNH Note: nucleases Location: 2 2 9510-2 2 9648 bp Feature: gene Location: 230977-231993 bp Feature: domain Description: COG3178 Location: 230980-231979 bp Feature: domain Description: COG3178 Location: 2 30980-2 31979 bp Feature: gene Location: 231990-232664 bp Feature: domain Description: NTP_transferase_like_1 Location: 231996-232635 bp Feature: domain Description: NTP_transferase_like_1 Location: 2 31996-2 32 635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTPL01000041.1 (35909 bp)
Overview 1 RT 1: 25776-33947 bp Neighborhood of RT #1 [25776, 34141] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25776-27647 bp Feature: domain Description: DUF262 Location: 25824-26592 bp Feature: domain Description: DUF262 Location: 25824-26592 bp Feature: gene Location: 27651-28760 bp Feature: domain Description: YeeA Location: 27846-28626 bp Feature: domain Description: YeeA Location: 27846-28626 bp Feature: gene Location: 29428-32448 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923-30394 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923 -3 03 94 bp Feature: gene Location: 32445-33002 bp Feature: gene Location: 33002-34141 bp Feature: domain Description: AAA_21 Location: 33074-33143 bp Feature: domain Description: AAA_21 Location: 3 3 074-3 3 143 bp Feature: domain Description: AAA_21 Location: 33617-33947 bp Feature: domain Description: AAA_21 Location: 3 3 617-3 3 947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)