myRT

myRT report for GCA_000792605.1_AZPAE14997

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Seq: JTOX01000015.1 Pseudomonas aeruginosa strain AZPAE14997 AZPAE14997_contig_15, whole genome shotgun sequence (152015 bp)
Overview 1 RT 1: 35082-39378 bp Neighborhood of RT #1 [35082, 39461] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 35082-35261 bp Feature: gene Location: 35445-35843 bp Feature: gene Location: 35993-37261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36206-36863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36206-36863 bp Feature: domain Description: GIIM Note: maturase Location: 36941-37163 bp Feature: domain Description: GIIM Note: maturase Location: 36941 -371 63 bp Feature: gene Location: 37650-38291 bp Feature: domain Description: DUF772 Location: 37800-37995 bp Feature: domain Description: DUF772 Location: 37800-37995 bp Feature: gene Location: 38634-39461 bp Feature: domain Description: ABC_phnC Location: 38664-39378 bp Feature: domain Description: ABC_phnC Location: 38664-39378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: JTOX01000019.1 Pseudomonas aeruginosa strain AZPAE14997 AZPAE14997_contig_19, whole genome shotgun sequence (282173 bp)
Overview 1 RT 1: 197309-207615 bp 2 RT 2: 223878-232715 bp Neighborhood of RT #1 [197309, 207617] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [223878, 232744] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 197309-198430 bp Feature: domain Description: COG3177 Location: 197327-198419 bp Feature: domain Description: COG3177 Location: 19732 7-198419 bp Feature: gene Location: 198689-198826 bp Feature: gene Location: 199154-200839 bp Feature: domain Description: RVT_N Location: 199211-199451 bp Feature: domain Description: RVT_N Location: 1992 11-199451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199499-200135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199499-2 00135 bp Feature: domain Description: GIIM Note: maturase Location: 200189-200420 bp Feature: domain Description: GIIM Note: maturase Location: 2 00189-2 0042 0 bp Feature: domain Description: HNH Note: nucleases Location: 200672-200810 bp Feature: domain Description: HNH Note: nucleases Location: 2 00672 -2 00810 bp Feature: gene Location: 201920-205657 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 202028-202685 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 02 02 8-2 02 685 bp Feature: domain Description: PRK09776 Location: 202898-203369 bp Feature: domain Description: PRK09776 Location: 2 02 898-2 03369 bp Feature: domain Description: PAS Location: 203459-203951 bp Feature: domain Description: PAS Location: 2 03459-2 03951 bp Feature: domain Description: PRK10060 Location: 203960-205607 bp Feature: domain Description: PRK10060 Location: 2 03960-2 05607 bp Feature: gene Location: 205764-207617 bp Feature: domain Description: PRK05658 Location: 205776-207615 bp Feature: domain Description: PRK05658 Location: 2 05776-2 07615 bp Feature: gene Location: 223878-225092 bp Feature: domain Description: PRK10770 Location: 223890-225084 bp Feature: domain Description: PRK10770 Location: 2 2 3890-2 2 5084 bp Feature: gene Location: 225151-227940 bp Feature: domain Description: LptD Location: 225346-227926 bp Feature: domain Description: LptD Location: 2 2 5346-2 2 792 6 bp Feature: gene Location: 228073-229785 bp Feature: domain Description: RVT_N Location: 228130-228373 bp Feature: domain Description: RVT_N Location: 2 2 8130-2 2 8373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228418-229054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 8418-2 2 9054 bp Feature: domain Description: YkfC Location: 229264-229414 bp Feature: domain Description: YkfC Location: 2 2 92 64-2 2 9414 bp Feature: domain Description: HNH Note: nucleases Location: 229591-229729 bp Feature: domain Description: HNH Note: nucleases Location: 2 2 9591-2 2 972 9 bp Feature: gene Location: 231057-232073 bp Feature: domain Description: COG3178 Location: 231060-232059 bp Feature: domain Description: COG3178 Location: 2 31060-2 32 059 bp Feature: gene Location: 232070-232744 bp Feature: domain Description: NTP_transferase_like_1 Location: 232076-232715 bp Feature: domain Description: NTP_transferase_like_1 Location: 2 32 076-2 32 715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTOX01000025.1 Pseudomonas aeruginosa strain AZPAE14997 AZPAE14997_contig_25, whole genome shotgun sequence (85085 bp)
Overview 1 RT 1: 47421-49573 bp Neighborhood of RT #1 [47421, 50106] HipB RVT-UG17 Feature: gene Location: 47421-47702 bp Feature: domain Description: HipB Location: 47442-47676 bp Feature: domain Description: HipB Location: 47442-47676 bp Feature: gene Location: 47788-48213 bp Feature: gene Location: 48742-50106 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 48970-49573 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 48970-49573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17