myRT

myRT report for GCA_000792635.1_AZPAE14999

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Seq: JTOV01000027.1 (29607 bp)
Overview 1 RT 1: 15861-23869 bp Neighborhood of RT #1 [15861, 23871] AdoMet_MTases DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG0390 SF2_C_SNF umuC Feature: gene Location: 15861-17306 bp Feature: domain Description: AdoMet_MTases Location: 15984-16350 bp Feature: domain Description: AdoMet_MTases Location: 1 5984-1 6350 bp Feature: gene Location: 17405-18436 bp Feature: domain Description: DEXHc_Snf Location: 17603-17849 bp Feature: domain Description: DEXHc_Snf Location: 1 7603-1 7849 bp Feature: gene Location: 19033-20751 bp Feature: RT Description: RVT_N Location: 19090-19327 bp Feature: RT Description: RVT_N Location: 1 9090-1 9327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19378-20029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9378-20029 bp Feature: domain Description: GIIM Note: maturase Location: 20083-20314 bp Feature: domain Description: GIIM Note: maturase Location: 20083-2031 4 bp Feature: domain Description: HNHc Note: nucleases Location: 20548-20704 bp Feature: domain Description: HNHc Note: nucleases Location: 20548-20704 bp Feature: gene Location: 20819-22078 bp Feature: domain Description: KOG0390 Location: 20852-20975 bp Feature: domain Description: KOG0390 Location: 20852-20975 bp Feature: domain Description: SF2_C_SNF Location: 21533-21914 bp Feature: domain Description: SF2_C_SNF Location: 21 533-21 91 4 bp Feature: gene Location: 22762-23871 bp Feature: domain Description: umuC Location: 22765-23869 bp Feature: domain Description: umuC Location: 22765-23869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), SF2_C_SNF (cd18793), umuC (PRK03609)

Seq: JTOV01000025.1 (217499 bp)
Overview 1 RT 1: 87006-92828 bp Neighborhood of RT #1 [87006, 92845] clpP tig RVT_N RVT-GII GIIM HNH OmpR Feature: gene Location: 87006-87647 bp Feature: domain Description: clpP Location: 87060-87636 bp Feature: domain Description: clpP Location: 87060-87636 bp Feature: gene Location: 87741-89009 bp Feature: domain Description: tig Location: 87744-88980 bp Feature: domain Description: tig Location: 87744-88980 bp Feature: gene Location: 89181-90884 bp Feature: RT Description: RVT_N Location: 89238-89481 bp Feature: RT Description: RVT_N Location: 892 38-89481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89526-90162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8952 6-90162 bp Feature: domain Description: GIIM Note: maturase Location: 90213-90447 bp Feature: domain Description: GIIM Note: maturase Location: 902 13-90447 bp Feature: domain Description: HNH Note: nucleases Location: 90699-90837 bp Feature: domain Description: HNH Note: nucleases Location: 90699-90837 bp Feature: gene Location: 90670-90804 bp Feature: gene Location: 92138-92845 bp Feature: domain Description: OmpR Location: 92162-92828 bp Feature: domain Description: OmpR Location: 92 162 -92 82 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), OmpR (COG0745)

Seq: JTOV01000012.1 (290364 bp)
Overview 1 RT 1: 49335-58194 bp 2 RT 2: 74458-84233 bp Neighborhood of RT #1 [49335, 58202] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74458, 84283] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH INT_Rci_Hp1_C Feature: gene Location: 49335-50009 bp Feature: domain Description: NTP_transferase_like_1 Location: 49341-49980 bp Feature: domain Description: NTP_transferase_like_1 Location: 493 41-49980 bp Feature: gene Location: 50006-51022 bp Feature: domain Description: COG3178 Location: 50009-51008 bp Feature: domain Description: COG3 178 Location: 50009-51008 bp Feature: gene Location: 52295-54007 bp Feature: RT Description: RVT_N Location: 52352-52595 bp Feature: RT Description: RVT_N Location: 523 52-52595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52640-53276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52640-53 276 bp Feature: domain Description: YkfC Location: 53486-53636 bp Feature: domain Description: YkfC Location: 53 486-53 63 6 bp Feature: domain Description: HNH Note: nucleases Location: 53813-53951 bp Feature: domain Description: HNH Note: nucleases Location: 53 813 -53 951 bp Feature: gene Location: 54140-56929 bp Feature: domain Description: LptD Location: 54335-56915 bp Feature: domain Description: LptD Location: 543 3 5-56915 bp Feature: gene Location: 56988-58202 bp Feature: domain Description: PRK10770 Location: 57000-58194 bp Feature: domain Description: PRK10770 Location: 57000-58194 bp Feature: gene Location: 74458-76311 bp Feature: domain Description: PRK05658 Location: 74470-76309 bp Feature: domain Description: PRK05658 Location: 74470-763 09 bp Feature: gene Location: 76418-80155 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76526-77183 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76526-77183 bp Feature: domain Description: PRK09776 Location: 77396-77867 bp Feature: domain Description: PRK09776 Location: 773 96-77867 bp Feature: domain Description: PAS Location: 77939-78449 bp Feature: domain Description: PAS Location: 7793 9-78449 bp Feature: domain Description: PRK10060 Location: 78458-80105 bp Feature: domain Description: PRK10060 Location: 78458-80105 bp Feature: gene Location: 81236-82921 bp Feature: RT Description: RVT_N Location: 81293-81533 bp Feature: RT Description: RVT_N Location: 81293 -8153 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81581-82217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81581-82217 bp Feature: domain Description: GIIM Note: maturase Location: 82271-82502 bp Feature: domain Description: GIIM Note: maturase Location: 82271-82502 bp Feature: domain Description: HNH Note: nucleases Location: 82754-82892 bp Feature: domain Description: HNH Note: nucleases Location: 82754-82892 bp Feature: gene Location: 83222-84283 bp Feature: domain Description: INT_Rci_Hp1_C Location: 83732-84233 bp Feature: domain Description: INT_Rci_Hp1_C Location: 83 73 2-8423 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), INT_Rci_Hp1_C (cd00796)