myRT

myRT report for GCA_000792705.1_AZPAE15002

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Seq: JTOS01000001.1 (348509 bp)
Overview 1 RT 1: 49286-58127 bp 2 RT 2: 74391-84315 bp Neighborhood of RT #1 [49286, 58135] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74391, 84398] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH int HTH_XRE Feature: gene Location: 49286-49960 bp Feature: domain Description: NTP_transferase_like_1 Location: 49292-49931 bp Feature: domain Description: NTP_transferase_like_1 Location: 49292-49931 bp Feature: gene Location: 49957-50973 bp Feature: domain Description: COG3178 Location: 49960-50959 bp Feature: domain Description: COG31 78 Location: 49960-50959 bp Feature: gene Location: 52246-53958 bp Feature: domain Description: RVT_N Location: 52303-52546 bp Feature: domain Description: RVT_N Location: 52303-52546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52591-53227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52591 -53227 bp Feature: domain Description: YkfC Location: 53437-53587 bp Feature: domain Description: YkfC Location: 53437-53587 bp Feature: domain Description: HNH Note: nucleases Location: 53764-53902 bp Feature: domain Description: HNH Note: nucleases Location: 53764-53902 bp Feature: gene Location: 54091-56862 bp Feature: domain Description: LptD Location: 54286-56848 bp Feature: domain Description: LptD Location: 54286-56848 bp Feature: gene Location: 56921-58135 bp Feature: domain Description: PRK10770 Location: 56933-58127 bp Feature: domain Description: PRK1 0770 Location: 56933-581 27 bp Feature: gene Location: 74391-76244 bp Feature: domain Description: PRK05658 Location: 74403-76242 bp Feature: domain Description: PRK05658 Location: 74403-76242 bp Feature: gene Location: 76351-80088 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76459-77116 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76459-771 1 6 bp Feature: domain Description: PRK09776 Location: 77329-77800 bp Feature: domain Description: PRK09776 Location: 77329-77800 bp Feature: domain Description: PAS Location: 77857-78382 bp Feature: domain Description: PAS Location: 77857-78382 bp Feature: domain Description: PRK10060 Location: 78394-80038 bp Feature: domain Description: PRK1 0060 Location: 78394-80038 bp Feature: gene Location: 81169-82854 bp Feature: domain Description: RVT_N Location: 81226-81466 bp Feature: domain Description: RVT_N Location: 81 226-81 466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81514-82150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 51 4-821 50 bp Feature: domain Description: GIIM Note: maturase Location: 82204-82435 bp Feature: domain Description: GIIM Note: maturase Location: 82204-82435 bp Feature: domain Description: HNH Note: nucleases Location: 82687-82825 bp Feature: domain Description: HNH Note: nucleases Location: 82687-82825 bp Feature: gene Location: 82985-84154 bp Feature: domain Description: int Location: 82988-84005 bp Feature: domain Description: int Location: 82988-84005 bp Feature: gene Location: 84159-84398 bp Feature: domain Description: HTH_XRE Location: 84171-84315 bp Feature: domain Description: HTH_XRE Location: 841 71 -8431 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), int (PHA02601), HTH_XRE (smart00530)

Seq: JTOS01000026.1 (35908 bp)
Overview 1 RT 1: 25776-33948 bp Neighborhood of RT #1 [25776, 34142] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25776-27647 bp Feature: domain Description: DUF262 Location: 25824-26592 bp Feature: domain Description: DUF2 62 Location: 2 582 4-2 6592 bp Feature: gene Location: 27651-29432 bp Feature: domain Description: YeeA Location: 28518-29298 bp Feature: domain Description: YeeA Location: 2 8518-2 92 98 bp Feature: gene Location: 29429-32449 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29924-30395 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 992 4-30395 bp Feature: gene Location: 32446-33003 bp Feature: gene Location: 33003-34142 bp Feature: domain Description: AAA_21 Location: 33075-33144 bp Feature: domain Description: AAA_2 1 Location: 33075-33144 bp Feature: domain Description: AAA_21 Location: 33618-33948 bp Feature: domain Description: AAA_2 1 Location: 33618-33948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: JTOS01000031.1 (36375 bp)
Overview 1 RT 1: 3-2116 bp Neighborhood of RT #1 [3, 2116] RVT-GII GIIM Feature: gene Location: 3-1205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150-807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150-807 bp Feature: domain Description: GIIM Note: maturase Location: 885-1107 bp Feature: domain Description: GIIM Note: maturase Location: 885-1107 bp Feature: gene Location: 1355-1753 bp Feature: gene Location: 1937-2116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JTOS01000075.1 (2426 bp)
Overview 1 RT 1: 1-2292 bp Neighborhood of RT #1 [1, 2339] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-192 bp Feature: gene Location: 223-351 bp Feature: gene Location: 621-2339 bp Feature: domain Description: RVT_N Location: 678-915 bp Feature: domain Description: RVT_N Location: 678-915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966-1617 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1902 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1902 bp Feature: domain Description: HNHc Note: nucleases Location: 2136-2292 bp Feature: domain Description: HNHc Note: nucleases Location: 2136-2292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JTOS01000051.1 (2991 bp)
Overview 1 RT 1: 75-2072 bp Neighborhood of RT #1 [75, 2072] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 75-1781 bp Feature: domain Description: RVT_N Location: 132-375 bp Feature: domain Description: RVT_N Location: 132-375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-105 6 bp Feature: domain Description: YkfC Location: 1254-1359 bp Feature: domain Description: YkfC Location: 125 4-135 9 bp Feature: domain Description: HNHc Note: nucleases Location: 1569-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 15 69-1725 bp Feature: gene Location: 1878-2072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)