myRT

myRT report for GCA_000792845.1_AZPAE15009

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Seq: JTOL01000014.1 (54830 bp)
Overview 1 RT 1: 16676-20822 bp Neighborhood of RT #1 [16676, 20822] ABC_phnC RVT-GII GIIM Feature: gene Location: 16676-17503 bp Feature: domain Description: ABC_phnC Location: 16706-17420 bp Feature: domain Description: ABC_phnC Location: 1 6706-1 7420 bp Feature: gene Location: 17983-18150 bp Feature: gene Location: 18643-19911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18856-19513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8856-1 951 3 bp Feature: domain Description: GIIM Note: maturase Location: 19591-19813 bp Feature: domain Description: GIIM Note: maturase Location: 1 9591 -1 981 3 bp Feature: gene Location: 20061-20459 bp Feature: gene Location: 20643-20822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), RVT-GII, GIIM (pfam08388)

Seq: JTOL01000041.1 (170981 bp)
Overview 1 RT 1: 86585-96590 bp 2 RT 2: 112848-121668 bp Neighborhood of RT #1 [86585, 96592] HTH_XRE int RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [112848, 121697] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 86585-86824 bp Feature: domain Description: HTH_XRE Location: 86597-86741 bp Feature: domain Description: HTH_XRE Location: 86597-86741 bp Feature: gene Location: 86829-87998 bp Feature: domain Description: int Location: 86832-87849 bp Feature: domain Description: int Location: 86832 -87849 bp Feature: gene Location: 88129-89814 bp Feature: domain Description: RVT_N Location: 88186-88426 bp Feature: domain Description: RVT_N Location: 88186-8842 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88474-89110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88474-89110 bp Feature: domain Description: GIIM Note: maturase Location: 89164-89395 bp Feature: domain Description: GIIM Note: maturase Location: 89164-89395 bp Feature: domain Description: HNH Note: nucleases Location: 89647-89785 bp Feature: domain Description: HNH Note: nucleases Location: 89647-89785 bp Feature: gene Location: 90895-94632 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 91003-91660 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 91003-91660 bp Feature: domain Description: PRK09776 Location: 91873-92344 bp Feature: domain Description: PRK09776 Location: 91873-92 344 bp Feature: domain Description: PAS Location: 92401-92926 bp Feature: domain Description: PAS Location: 92 401-92 92 6 bp Feature: domain Description: PRK10060 Location: 92938-94582 bp Feature: domain Description: PRK10060 Location: 92 938-94582 bp Feature: gene Location: 94739-96592 bp Feature: domain Description: PRK05658 Location: 94751-96590 bp Feature: domain Description: PRK05658 Location: 94751-96590 bp Feature: gene Location: 112848-114062 bp Feature: domain Description: PRK10770 Location: 112860-114054 bp Feature: domain Description: PRK10770 Location: 112 860-114054 bp Feature: gene Location: 114121-116892 bp Feature: domain Description: LptD Location: 114316-116878 bp Feature: domain Description: LptD Location: 114316-116878 bp Feature: gene Location: 117025-118737 bp Feature: domain Description: RVT_N Location: 117082-117325 bp Feature: domain Description: RVT_N Location: 117082 -11732 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117370-118006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117370-118006 bp Feature: domain Description: YkfC Location: 118216-118366 bp Feature: domain Description: YkfC Location: 1182 16-118366 bp Feature: domain Description: HNH Note: nucleases Location: 118543-118681 bp Feature: domain Description: HNH Note: nucleases Location: 118543-118681 bp Feature: gene Location: 120010-121026 bp Feature: domain Description: COG3178 Location: 120013-121012 bp Feature: domain Description: COG3178 Location: 12 0013-12 1012 bp Feature: gene Location: 121023-121697 bp Feature: domain Description: NTP_transferase_like_1 Location: 121029-121668 bp Feature: domain Description: NTP_transferase_like_1 Location: 12 102 9-12 1668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), int (PHA02601), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTOL01000025.1 (35906 bp)
Overview 1 RT 1: 1766-9077 bp Neighborhood of RT #1 [1766, 10132] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1766-2905 bp Feature: domain Description: AAA_21 Location: 1838-1907 bp Feature: domain Description: AAA_21 Location: 183 8-1907 bp Feature: domain Description: AAA_21 Location: 2381-2711 bp Feature: domain Description: AAA_21 Location: 23 81-2711 bp Feature: gene Location: 2905-3462 bp Feature: gene Location: 3459-6479 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3954-4425 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 954-4425 bp Feature: gene Location: 6476-8257 bp Feature: domain Description: YeeA Location: 7343-8123 bp Feature: domain Description: YeeA Location: 73 43 -8123 bp Feature: gene Location: 8261-10132 bp Feature: domain Description: DUF262 Location: 8309-9077 bp Feature: domain Description: DUF262 Location: 83 09-9077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)