myRT

myRT report for GCA_000792965.1_AZPAE15016

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Seq: JTOE01000022.1 (96293 bp)
Overview 1 RT 1: 99-5399 bp Neighborhood of RT #1 [99, 5428] ALDH_F5_SSADH_GabD IS5 RVT-GII InsE TnpB_IS66 Feature: gene Location: 99-1544 bp Feature: domain Description: ALDH_F5_SSADH_GabD Location: 183-1530 bp Feature: domain Description: ALDH_F5_SSADH_GabD Location: 1 83-1 530 bp Feature: gene Location: 1917-2897 bp Feature: domain Description: IS5 Location: 2106-2865 bp Feature: domain Description: IS5 Location: 21 06-2865 bp Feature: gene Location: 3157-4635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3871-4483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3871 -4483 bp Feature: gene Location: 4791-5096 bp Feature: domain Description: InsE Location: 4797-4989 bp Feature: domain Description: InsE Location: 4797-4989 bp Feature: gene Location: 5093-5428 bp Feature: domain Description: TnpB_IS66 Location: 5111-5399 bp Feature: domain Description: TnpB_IS66 Location: 51 1 1 -5399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, InsE (COG2963), TnpB_IS66 (pfam05717), ALDH_F5_SSADH_GabD (cd07103)

Seq: JTOE01000034.1 (238007 bp)
Overview 1 RT 1: 83708-94378 bp Neighborhood of RT #1 [83708, 94443] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 83708-85561 bp Feature: domain Description: PRK05658 Location: 83720-85559 bp Feature: domain Description: PRK05658 Location: 8372 0-85559 bp Feature: gene Location: 85668-89405 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85776-86433 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 85776-86433 bp Feature: domain Description: PRK09776 Location: 86646-87117 bp Feature: domain Description: PRK09776 Location: 86646-87117 bp Feature: domain Description: PAS Location: 87162-87699 bp Feature: domain Description: PAS Location: 87162 -87699 bp Feature: domain Description: PRK10060 Location: 87708-89355 bp Feature: domain Description: PRK10060 Location: 87708-89355 bp Feature: gene Location: 90486-92171 bp Feature: RT Description: RVT_N Location: 90543-90783 bp Feature: RT Description: RVT_N Location: 90543-90783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90831-91467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90831-91467 bp Feature: domain Description: GIIM Note: maturase Location: 91521-91752 bp Feature: domain Description: GIIM Note: maturase Location: 9152 1-91752 bp Feature: domain Description: HNH Note: nucleases Location: 92004-92142 bp Feature: domain Description: HNH Note: nucleases Location: 92 004-92 142 bp Feature: gene Location: 92894-94015 bp Feature: domain Description: COG3177 Location: 92912-94004 bp Feature: domain Description: COG3177 Location: 92 912 -94004 bp Feature: gene Location: 94108-94443 bp Feature: domain Description: NERD Location: 94207-94378 bp Feature: domain Description: NERD Location: 942 07-94378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )
NERD (pfam08378)