myRT

myRT report for GCA_000793245.1_AZPAE15059

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Seq: JTMN01000024.1 (131543 bp)
Overview 1 RT 1: 32831-43139 bp 2 RT 2: 59397-68237 bp Neighborhood of RT #1 [32831, 43141] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [59397, 68266] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 32831-33952 bp Feature: domain Description: COG3177 Location: 32849-33941 bp Feature: domain Description: COG31 77 Location: 32849-33941 bp Feature: gene Location: 34214-34375 bp Feature: gene Location: 34678-36363 bp Feature: RT Description: RVT_N Location: 34735-34975 bp Feature: RT Description: RVT_N Location: 34735-34975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35023-35659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35023-35659 bp Feature: domain Description: GIIM Note: maturase Location: 35713-35944 bp Feature: domain Description: GIIM Note: maturase Location: 3571 3-35944 bp Feature: domain Description: HNH Note: nucleases Location: 36196-36334 bp Feature: domain Description: HNH Note: nucleases Location: 361 96-36334 bp Feature: gene Location: 37444-41181 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 37552-38209 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 37552-38209 bp Feature: domain Description: PRK09776 Location: 38422-38893 bp Feature: domain Description: PRK09776 Location: 38422-38893 bp Feature: domain Description: PAS Location: 38944-39475 bp Feature: domain Description: PAS Location: 38944-39475 bp Feature: domain Description: PRK10060 Location: 39484-41131 bp Feature: domain Description: PRK1 0060 Location: 39484-41 1 31 bp Feature: gene Location: 41288-43141 bp Feature: domain Description: PRK05658 Location: 41300-43139 bp Feature: domain Description: PRK05658 Location: 41 300-431 39 bp Feature: gene Location: 59397-60611 bp Feature: domain Description: PRK10770 Location: 59409-60603 bp Feature: domain Description: PRK1 0770 Location: 59409-60603 bp Feature: gene Location: 60670-63462 bp Feature: domain Description: LptD Location: 60865-63448 bp Feature: domain Description: LptD Location: 60865-63448 bp Feature: gene Location: 63595-65307 bp Feature: RT Description: RVT_N Location: 63652-63895 bp Feature: RT Description: RVT_N Location: 63652-63895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63940-64573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63940-64573 bp Feature: domain Description: YkfC Location: 64786-64936 bp Feature: domain Description: YkfC Location: 64786-64936 bp Feature: domain Description: HNH Note: nucleases Location: 65113-65251 bp Feature: domain Description: HNH Note: nucleases Location: 651 1 3-65251 bp Feature: gene Location: 66579-67595 bp Feature: domain Description: COG3178 Location: 66582-67581 bp Feature: domain Description: COG31 78 Location: 66582-67581 bp Feature: gene Location: 67592-68266 bp Feature: domain Description: NTP_transferase_like_1 Location: 67598-68237 bp Feature: domain Description: NTP_transferase_like_1 Location: 67598-68237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTMN01000020.1 (154941 bp)
Overview 1 RT 1: 79157-84909 bp Neighborhood of RT #1 [79157, 85016] DEXHc_Snf RVT_N RVT-GII YkfC HNHc KOG0389 SF2_C_SNF conj_PilL Feature: gene Location: 79157-79462 bp Feature: gene Location: 79599-80519 bp Feature: domain Description: DEXHc_Snf Location: 79818-80073 bp Feature: domain Description: DEXHc_Snf Location: 79818-80073 bp Feature: gene Location: 81119-82816 bp Feature: RT Description: RVT_N Location: 81173-81416 bp Feature: RT Description: RVT_N Location: 81173-81416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81461-82103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81461-82 103 bp Feature: domain Description: YkfC Location: 82103-82412 bp Feature: domain Description: YkfC Location: 82 103-82 412 bp Feature: domain Description: HNHc Note: nucleases Location: 82607-82769 bp Feature: domain Description: HNHc Note: nucleases Location: 82 607-82 769 bp Feature: gene Location: 82911-84278 bp Feature: domain Description: KOG0389 Location: 83043-83172 bp Feature: domain Description: KOG0389 Location: 83043-83172 bp Feature: domain Description: SF2_C_SNF Location: 83718-84114 bp Feature: domain Description: SF2 _C_SNF Location: 83718-84114 bp Feature: gene Location: 84417-85016 bp Feature: domain Description: conj_PilL Location: 84600-84909 bp Feature: domain Description: conj_PilL Location: 84600-84909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), conj_PilL (TIGR03748)