myRT

myRT report for GCA_000793255.1_AZPAE15060

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Seq: JTMM01000006.1 (2433 bp)
Overview 1 RT 1: 1-2304 bp Neighborhood of RT #1 [1, 2351] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-204 bp Feature: gene Location: 235-363 bp Feature: gene Location: 633-2351 bp Feature: domain Description: RVT_N Location: 690-927 bp Feature: domain Description: RVT_N Location: 690-927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1 629 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1914 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 91 4 bp Feature: domain Description: HNHc Note: nucleases Location: 2148-2304 bp Feature: domain Description: HNHc Note: nucleases Location: 21 48-2304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JTMM01000030.1 (96927 bp)
Overview 1 RT 1: 1-6329 bp Neighborhood of RT #1 [1, 6616] RVT-UG5 nitrilase COG4127 restrict_AAA_1 restrict_AAA_1 Feature: gene Location: 1-2565 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 22-517 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 2 -517 bp Feature: domain Description: nitrilase Location: 1879-2461 bp Feature: domain Description: nitrilase Location: 1879-2 461 bp Feature: gene Location: 2935-3927 bp Feature: domain Description: COG4127 Location: 2941-3916 bp Feature: domain Description: COG412 7 Location: 2 941-3916 bp Feature: gene Location: 4865-6616 bp Feature: domain Description: restrict_AAA_1 Location: 4868-5615 bp Feature: domain Description: restrict_AAA_1 Location: 4868-5615 bp Feature: domain Description: restrict_AAA_1 Location: 5942-6329 bp Feature: domain Description: restrict_AAA_1 Location: 5942 -632 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), restrict_AAA_1 (TIGR04435)

Seq: JTMM01000043.1 (163576 bp)
Overview 1 RT 1: 64319-72491 bp 2 RT 2: 88756-100000 bp Neighborhood of RT #1 [64319, 72499] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [88756, 100005] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD zf-C4_Topoisom Feature: gene Location: 64319-65335 bp Feature: domain Description: COG3178 Location: 64322-65321 bp Feature: domain Description: COG3 178 Location: 643 22-653 21 bp Feature: gene Location: 65632-65766 bp Feature: gene Location: 66607-68319 bp Feature: domain Description: RVT_N Location: 66664-66907 bp Feature: domain Description: RVT_N Location: 66664-66907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66952-67585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66952-67585 bp Feature: domain Description: YkfC Location: 67798-67948 bp Feature: domain Description: YkfC Location: 67798-67948 bp Feature: domain Description: HNH Note: nucleases Location: 68125-68263 bp Feature: domain Description: HNH Note: nucleases Location: 68125-68263 bp Feature: gene Location: 68452-71226 bp Feature: domain Description: LptD Location: 68647-71212 bp Feature: domain Description: LptD Location: 68647-71212 bp Feature: gene Location: 71285-72499 bp Feature: domain Description: PRK10770 Location: 71297-72491 bp Feature: domain Description: PRK10770 Location: 71297-72491 bp Feature: gene Location: 88756-90609 bp Feature: domain Description: PRK05658 Location: 88768-90607 bp Feature: domain Description: PRK05658 Location: 88768-90607 bp Feature: gene Location: 90716-94453 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90824-91481 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90824-91481 bp Feature: domain Description: PRK09776 Location: 91694-92165 bp Feature: domain Description: PRK09776 Location: 91694-92165 bp Feature: domain Description: PAS Location: 92222-92747 bp Feature: domain Description: PAS Location: 92222-92747 bp Feature: domain Description: PRK10060 Location: 92759-94403 bp Feature: domain Description: PRK10060 Location: 92759-94403 bp Feature: gene Location: 95534-97219 bp Feature: domain Description: RVT_N Location: 95591-95831 bp Feature: domain Description: RVT_N Location: 95591-9583 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95879-96515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95879-96515 bp Feature: domain Description: GIIM Note: maturase Location: 96569-96800 bp Feature: domain Description: GIIM Note: maturase Location: 96569-96800 bp Feature: domain Description: HNH Note: nucleases Location: 97052-97190 bp Feature: domain Description: HNH Note: nucleases Location: 97052-97190 bp Feature: gene Location: 97942-99063 bp Feature: domain Description: COG3177 Location: 97960-99052 bp Feature: domain Description: COG3 177 Location: 97960-99052 bp Feature: gene Location: 99235-100005 bp Feature: domain Description: NERD Location: 99334-99667 bp Feature: domain Description: NERD Location: 993 3 4-99667 bp Feature: domain Description: zf-C4_Topoisom Location: 99886-100000 bp Feature: domain Description: zf-C4_Topoisom Location: 99886-100000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378), zf-C4_Topoisom (pfam01396)