myRT

myRT report for GCA_000793485.1_AZPAE15070

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Seq: JTMC01000013.1 (240611 bp)
Overview 1 RT 1: 155752-166058 bp 2 RT 2: 182316-191154 bp Neighborhood of RT #1 [155752, 166060] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [182316, 191183] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 155752-156873 bp Feature: domain Description: COG3177 Location: 155770-156862 bp Feature: domain Description: COG31 77 Location: 1 55770-1 56862 bp Feature: gene Location: 157132-157269 bp Feature: gene Location: 157597-159282 bp Feature: domain Description: RVT_N Location: 157654-157894 bp Feature: domain Description: RVT_N Location: 1 57654-1 57894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157942-158578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 57942-1 58578 bp Feature: domain Description: GIIM Note: maturase Location: 158632-158863 bp Feature: domain Description: GIIM Note: maturase Location: 1 58632-1 58863 bp Feature: domain Description: HNH Note: nucleases Location: 159115-159253 bp Feature: domain Description: HNH Note: nucleases Location: 1 591 1 5-1 59253 bp Feature: gene Location: 160363-164100 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 160471-161128 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 60471 -1 61 1 28 bp Feature: domain Description: PRK09776 Location: 161341-161812 bp Feature: domain Description: PRK09776 Location: 1 61 341 -1 61 81 2 bp Feature: domain Description: PAS Location: 161902-162394 bp Feature: domain Description: PAS Location: 1 61 902-1 62394 bp Feature: domain Description: PRK10060 Location: 162403-164050 bp Feature: domain Description: PRK1 0060 Location: 1 62403-1 64050 bp Feature: gene Location: 164207-166060 bp Feature: domain Description: PRK05658 Location: 164219-166058 bp Feature: domain Description: PRK05658 Location: 1 6421 9-1 66058 bp Feature: gene Location: 182316-183530 bp Feature: domain Description: PRK10770 Location: 182328-183522 bp Feature: domain Description: PRK1 0770 Location: 1 82328-1 83522 bp Feature: gene Location: 183589-186378 bp Feature: domain Description: LptD Location: 183784-186364 bp Feature: domain Description: LptD Location: 1 83784-1 86364 bp Feature: gene Location: 186511-188223 bp Feature: domain Description: RVT_N Location: 186568-186811 bp Feature: domain Description: RVT_N Location: 1 86568-1 8681 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186856-187492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 86856-1 87492 bp Feature: domain Description: YkfC Location: 187702-187852 bp Feature: domain Description: YkfC Location: 1 87702-1 87852 bp Feature: domain Description: HNH Note: nucleases Location: 188029-188167 bp Feature: domain Description: HNH Note: nucleases Location: 1 88029-1 881 67 bp Feature: gene Location: 189496-190512 bp Feature: domain Description: COG3178 Location: 189499-190498 bp Feature: domain Description: COG31 78 Location: 1 89499-1 90498 bp Feature: gene Location: 190509-191183 bp Feature: domain Description: NTP_transferase_like_1 Location: 190515-191154 bp Feature: domain Description: NTP_transferase_like_1 Location: 1 9051 5-1 91 1 54 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTMC01000054.1 (21646 bp)
Overview 1 RT 1: 13272-17651 bp Neighborhood of RT #1 [13272, 17651] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 13272-14099 bp Feature: domain Description: ABC_phnC Location: 13302-14016 bp Feature: domain Description: ABC_phnC Location: 13302 -14016 bp Feature: gene Location: 14442-15083 bp Feature: domain Description: DUF772 Location: 14592-14787 bp Feature: domain Description: DUF772 Location: 14592 -14787 bp Feature: gene Location: 15472-16740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15685-16342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15685-16342 bp Feature: domain Description: GIIM Note: maturase Location: 16420-16642 bp Feature: domain Description: GIIM Note: maturase Location: 1642 0-16642 bp Feature: gene Location: 16890-17288 bp Feature: gene Location: 17472-17651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: JTMC01000035.1 (64064 bp)
Overview 1 RT 1: 27002-29154 bp Neighborhood of RT #1 [27002, 29687] HipB RVT-UG17 Feature: gene Location: 27002-27283 bp Feature: domain Description: HipB Location: 27023-27257 bp Feature: domain Description: HipB Location: 27023 -27257 bp Feature: gene Location: 27369-27794 bp Feature: gene Location: 28323-29687 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28551-29154 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28551-29154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17