myRT

myRT report for GCA_000793685.1_AZPAE14932

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Seq: JTRJ01000070.1 (143130 bp)
Overview 1 RT 1: 69531-75283 bp Neighborhood of RT #1 [69531, 75390] DEXHc_Snf RVT_N RVT-GII YkfC HNHc KOG0389 SF2_C_SNF conj_PilL Feature: gene Location: 69531-69836 bp Feature: gene Location: 69973-70893 bp Feature: domain Description: DEXHc_Snf Location: 70192-70447 bp Feature: domain Description: DEXHc_Snf Location: 701 92-70447 bp Feature: gene Location: 71493-73190 bp Feature: RT Description: RVT_N Location: 71547-71790 bp Feature: RT Description: RVT_N Location: 71 547-71 790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71835-72477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 835-72477 bp Feature: domain Description: YkfC Location: 72477-72786 bp Feature: domain Description: YkfC Location: 72477-72786 bp Feature: domain Description: HNHc Note: nucleases Location: 72981-73143 bp Feature: domain Description: HNHc Note: nucleases Location: 72981 -731 43 bp Feature: gene Location: 73285-74652 bp Feature: domain Description: KOG0389 Location: 73417-73546 bp Feature: domain Description: KOG0389 Location: 7341 7-73546 bp Feature: domain Description: SF2_C_SNF Location: 74092-74488 bp Feature: domain Description: SF2_C_SNF Location: 74092-74488 bp Feature: gene Location: 74791-75390 bp Feature: domain Description: conj_PilL Location: 74974-75283 bp Feature: domain Description: conj_PilL Location: 74974-75283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), conj_PilL (TIGR03748)

Seq: JTRJ01000028.1 (180229 bp)
Overview 1 RT 1: 651-9513 bp 2 RT 2: 25777-36076 bp Neighborhood of RT #1 [651, 9521] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [25777, 36087] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 651-1325 bp Feature: domain Description: NTP_transferase_like_1 Location: 657-1296 bp Feature: domain Description: NTP_transferase_like_1 Location: 657-12 96 bp Feature: gene Location: 1322-2338 bp Feature: domain Description: COG3178 Location: 1325-2324 bp Feature: domain Description: COG3178 Location: 132 5-2 32 4 bp Feature: gene Location: 3611-5323 bp Feature: RT Description: RVT_N Location: 3668-3911 bp Feature: RT Description: RVT_N Location: 3668-3911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3956-4592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3956-4592 bp Feature: domain Description: YkfC Location: 4799-4952 bp Feature: domain Description: YkfC Location: 4799-4952 bp Feature: domain Description: HNH Note: nucleases Location: 5129-5267 bp Feature: domain Description: HNH Note: nucleases Location: 512 9-52 67 bp Feature: gene Location: 5456-8248 bp Feature: domain Description: LptD Location: 5651-8234 bp Feature: domain Description: LptD Location: 5651-82 34 bp Feature: gene Location: 8307-9521 bp Feature: domain Description: PRK10770 Location: 8319-9513 bp Feature: domain Description: PRK10770 Location: 8319-9513 bp Feature: gene Location: 25777-27630 bp Feature: domain Description: PRK05658 Location: 25789-27628 bp Feature: domain Description: PRK05658 Location: 2 5789-2 762 8 bp Feature: gene Location: 27737-31474 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 27845-28502 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 7845-2 8502 bp Feature: domain Description: PRK09776 Location: 28715-29186 bp Feature: domain Description: PRK09776 Location: 2 8715-2 9186 bp Feature: domain Description: PAS Location: 29237-29768 bp Feature: domain Description: PAS Location: 2 92 37-2 9768 bp Feature: domain Description: PRK10060 Location: 29777-31424 bp Feature: domain Description: PRK10060 Location: 2 9777-3142 4 bp Feature: gene Location: 32555-34240 bp Feature: RT Description: RVT_N Location: 32612-32852 bp Feature: RT Description: RVT_N Location: 32 612 -32 852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32900-33536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 900-33536 bp Feature: domain Description: GIIM Note: maturase Location: 33590-33821 bp Feature: domain Description: GIIM Note: maturase Location: 33590-3382 1 bp Feature: domain Description: HNH Note: nucleases Location: 34073-34211 bp Feature: domain Description: HNH Note: nucleases Location: 34073-342 11 bp Feature: gene Location: 34543-34704 bp Feature: gene Location: 34966-36087 bp Feature: domain Description: COG3177 Location: 34984-36076 bp Feature: domain Description: COG3177 Location: 34984-36076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), NTP_transferase_like_1 (cd06422), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )