myRT

myRT report for GCA_000793745.1_AZPAE14920

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Seq: JTRV01000005.1 (303658 bp)
Overview 1 RT 1: 207612-217167 bp 2 RT 2: 233426-242264 bp Neighborhood of RT #1 [207612, 217169] INT_Rci_Hp1_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [233426, 242293] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 207612-208403 bp Feature: domain Description: INT_Rci_Hp1_C Location: 208122-208380 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 2081 22-208380 bp Feature: gene Location: 208706-210391 bp Feature: RT Description: RVT_N Location: 208763-209003 bp Feature: RT Description: RVT_N Location: 208763-209003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209051-209687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209051 -209687 bp Feature: domain Description: GIIM Note: maturase Location: 209741-209972 bp Feature: domain Description: GIIM Note: maturase Location: 209741 -209972 bp Feature: domain Description: HNH Note: nucleases Location: 210224-210362 bp Feature: domain Description: HNH Note: nucleases Location: 21 0224-21 0362 bp Feature: gene Location: 211472-215209 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 211580-212237 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 21 1 580-21 2237 bp Feature: domain Description: PRK09776 Location: 212450-212921 bp Feature: domain Description: PRK09776 Location: 21 2450-21 2921 bp Feature: domain Description: PAS Location: 212966-213503 bp Feature: domain Description: PAS Location: 21 2966-21 3503 bp Feature: domain Description: PRK10060 Location: 213512-215159 bp Feature: domain Description: PRK1 0060 Location: 21 351 2-21 51 59 bp Feature: gene Location: 215316-217169 bp Feature: domain Description: PRK05658 Location: 215328-217167 bp Feature: domain Description: PRK05658 Location: 21 5328-21 71 67 bp Feature: gene Location: 233426-234640 bp Feature: domain Description: PRK10770 Location: 233438-234632 bp Feature: domain Description: PRK1 0770 Location: 233438-234632 bp Feature: gene Location: 234699-237488 bp Feature: domain Description: LptD Location: 234894-237474 bp Feature: domain Description: LptD Location: 234894-237474 bp Feature: gene Location: 237621-239333 bp Feature: RT Description: RVT_N Location: 237678-237921 bp Feature: RT Description: RVT_N Location: 237678-237921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237966-238602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237966-238602 bp Feature: domain Description: YkfC Location: 238809-238962 bp Feature: domain Description: YkfC Location: 238809-238962 bp Feature: domain Description: HNH Note: nucleases Location: 239139-239277 bp Feature: domain Description: HNH Note: nucleases Location: 2391 39-239277 bp Feature: gene Location: 240606-241622 bp Feature: domain Description: COG3178 Location: 240609-241608 bp Feature: domain Description: COG31 78 Location: 240609-241 608 bp Feature: gene Location: 241619-242293 bp Feature: domain Description: NTP_transferase_like_1 Location: 241625-242264 bp Feature: domain Description: NTP_transferase_like_1 Location: 241 625-242264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)