myRT

myRT report for GCA_000793945.1_AZPAE14940

Download annotations/find similar RTs

Seq: JTRB01000117.1 (2418 bp)
Overview 1 RT 1: 83-2415 bp Neighborhood of RT #1 [83, 2415] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1801 bp Feature: domain Description: RVT_N Location: 140-377 bp Feature: domain Description: RVT_N Location: 1 40-377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1 079 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1364 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 33-1 364 bp Feature: domain Description: HNHc Note: nucleases Location: 1598-1754 bp Feature: domain Description: HNHc Note: nucleases Location: 1 598-1 754 bp Feature: gene Location: 2071-2199 bp Feature: gene Location: 2230-2415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JTRB01000065.1 (163554 bp)
Overview 1 RT 1: 63550-74797 bp 2 RT 2: 91056-99878 bp Neighborhood of RT #1 [63550, 74799] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [91056, 99907] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 63550-64320 bp Feature: domain Description: NERD Location: 63649-63982 bp Feature: domain Description: NERD Location: 63649-63982 bp Feature: domain Description: zf-C4_Topoisom Location: 64201-64315 bp Feature: domain Description: zf-C4_Topoisom Location: 642 01-64315 bp Feature: gene Location: 64492-65613 bp Feature: domain Description: COG3177 Location: 64510-65602 bp Feature: domain Description: COG3177 Location: 64510-65602 bp Feature: gene Location: 66336-68021 bp Feature: domain Description: RVT_N Location: 66393-66633 bp Feature: domain Description: RVT_N Location: 66393-66633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66681-67317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66681-67317 bp Feature: domain Description: GIIM Note: maturase Location: 67371-67602 bp Feature: domain Description: GIIM Note: maturase Location: 67371-67602 bp Feature: domain Description: HNH Note: nucleases Location: 67854-67992 bp Feature: domain Description: HNH Note: nucleases Location: 67854-67992 bp Feature: gene Location: 69102-72839 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 69210-69867 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 692 10-69867 bp Feature: domain Description: PRK09776 Location: 70080-70551 bp Feature: domain Description: PRK09776 Location: 70080-70551 bp Feature: domain Description: PAS Location: 70608-71133 bp Feature: domain Description: PAS Location: 70608-71133 bp Feature: domain Description: PRK10060 Location: 71145-72789 bp Feature: domain Description: PRK10060 Location: 71145-72 789 bp Feature: gene Location: 72946-74799 bp Feature: domain Description: PRK05658 Location: 72958-74797 bp Feature: domain Description: PRK05658 Location: 72 958-74797 bp Feature: gene Location: 91056-92270 bp Feature: domain Description: PRK10770 Location: 91068-92262 bp Feature: domain Description: PRK10770 Location: 91068-92 2 62 bp Feature: gene Location: 92329-95103 bp Feature: domain Description: LptD Location: 92524-95089 bp Feature: domain Description: LptD Location: 92 52 4-95089 bp Feature: gene Location: 95236-96948 bp Feature: domain Description: RVT_N Location: 95293-95536 bp Feature: domain Description: RVT_N Location: 952 93-95536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95581-96214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95581-962 14 bp Feature: domain Description: YkfC Location: 96427-96577 bp Feature: domain Description: YkfC Location: 9642 7-96577 bp Feature: domain Description: HNH Note: nucleases Location: 96754-96892 bp Feature: domain Description: HNH Note: nucleases Location: 96754-96892 bp Feature: gene Location: 98220-99236 bp Feature: domain Description: COG3178 Location: 98223-99222 bp Feature: domain Description: COG3178 Location: 982 2 3-992 2 2 bp Feature: gene Location: 99233-99907 bp Feature: domain Description: NTP_transferase_like_1 Location: 99239-99878 bp Feature: domain Description: NTP_transferase_like_1 Location: 992 39-99878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTRB01000037.1 (52850 bp)
Overview 1 RT 1: 1-6329 bp Neighborhood of RT #1 [1, 6616] RVT-UG5 nitrilase COG4127 restrict_AAA_1 restrict_AAA_1 Feature: gene Location: 1-2565 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 22-517 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 22-517 bp Feature: domain Description: nitrilase Location: 1879-2461 bp Feature: domain Description: nitrilase Location: 1879-2461 bp Feature: gene Location: 2935-3927 bp Feature: domain Description: COG4127 Location: 2941-3916 bp Feature: domain Description: COG4127 Location: 2941-3 916 bp Feature: gene Location: 4865-6616 bp Feature: domain Description: restrict_AAA_1 Location: 4868-5615 bp Feature: domain Description: restrict_AAA_1 Location: 4868-5615 bp Feature: domain Description: restrict_AAA_1 Location: 5942-6329 bp Feature: domain Description: restrict_AAA_1 Location: 5942-63 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), restrict_AAA_1 (TIGR04435)