myRT

myRT report for GCA_000793985.1_AZPAE14911

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Seq: JTSE01000009.1 (296200 bp)
Overview 1 RT 1: 199143-209451 bp 2 RT 2: 225710-234560 bp Neighborhood of RT #1 [199143, 209453] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [225710, 234589] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 199143-200264 bp Feature: domain Description: COG3177 Location: 199161-200253 bp Feature: domain Description: COG31 77 Location: 1 991 61 -200253 bp Feature: gene Location: 200526-200687 bp Feature: gene Location: 200990-202675 bp Feature: RT Description: RVT_N Location: 201047-201287 bp Feature: RT Description: RVT_N Location: 201 047-201 287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201335-201971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 335-201 971 bp Feature: domain Description: GIIM Note: maturase Location: 202025-202256 bp Feature: domain Description: GIIM Note: maturase Location: 202025-202256 bp Feature: domain Description: HNH Note: nucleases Location: 202508-202646 bp Feature: domain Description: HNH Note: nucleases Location: 202508-202646 bp Feature: gene Location: 203756-207493 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 203864-204521 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 203864-204521 bp Feature: domain Description: PRK09776 Location: 204734-205205 bp Feature: domain Description: PRK09776 Location: 204734-205205 bp Feature: domain Description: PAS Location: 205262-205787 bp Feature: domain Description: PAS Location: 205262-205787 bp Feature: domain Description: PRK10060 Location: 205796-207443 bp Feature: domain Description: PRK1 0060 Location: 205796-207443 bp Feature: gene Location: 207600-209453 bp Feature: domain Description: PRK05658 Location: 207612-209451 bp Feature: domain Description: PRK05658 Location: 20761 2-209451 bp Feature: gene Location: 225710-226924 bp Feature: domain Description: PRK10770 Location: 225722-226916 bp Feature: domain Description: PRK1 0770 Location: 225722-22691 6 bp Feature: gene Location: 226983-229784 bp Feature: domain Description: LptD Location: 227178-229770 bp Feature: domain Description: LptD Location: 2271 78-229770 bp Feature: gene Location: 229917-231629 bp Feature: RT Description: RVT_N Location: 229974-230217 bp Feature: RT Description: RVT_N Location: 229974-23021 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230262-230898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230262-230898 bp Feature: domain Description: YkfC Location: 231105-231258 bp Feature: domain Description: YkfC Location: 231 1 05-231 258 bp Feature: domain Description: HNH Note: nucleases Location: 231435-231573 bp Feature: domain Description: HNH Note: nucleases Location: 231 435-231 573 bp Feature: gene Location: 232902-233918 bp Feature: domain Description: COG3178 Location: 232905-233904 bp Feature: domain Description: COG31 78 Location: 232905-233904 bp Feature: gene Location: 233915-234589 bp Feature: domain Description: NTP_transferase_like_1 Location: 233921-234560 bp Feature: domain Description: NTP_transferase_like_1 Location: 233921 -234560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTSE01000010.1 (44866 bp)
Overview 1 RT 1: 9601-14726 bp Neighborhood of RT #1 [9601, 14734] RpmB rpmG RVT_N RVT-GII YkfC HNHc COG3450 PRK13360 Feature: gene Location: 9601-9837 bp Feature: domain Description: RpmB Location: 9604-9826 bp Feature: domain Description: RpmB Location: 9604-982 6 bp Feature: gene Location: 9849-10004 bp Feature: domain Description: rpmG Location: 9852-9996 bp Feature: domain Description: rpmG Location: 9852 -9996 bp Feature: gene Location: 11066-12763 bp Feature: RT Description: RVT_N Location: 11123-11366 bp Feature: RT Description: RVT_N Location: 1112 3-11366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11411-12047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11411-12 047 bp Feature: domain Description: YkfC Location: 12269-12404 bp Feature: domain Description: YkfC Location: 12 2 69-12 404 bp Feature: domain Description: HNHc Note: nucleases Location: 12551-12716 bp Feature: domain Description: HNHc Note: nucleases Location: 12 551-12 716 bp Feature: gene Location: 12978-13340 bp Feature: domain Description: COG3450 Location: 12981-13326 bp Feature: domain Description: COG3450 Location: 12 981-1332 6 bp Feature: gene Location: 13406-14734 bp Feature: domain Description: PRK13360 Location: 13412-14726 bp Feature: domain Description: PRK13360 Location: 13412 -1472 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), COG3450 (Predicted enzyme of the cupin superfamily ), PRK13360 (omega amino acid--pyruvate transaminase; Provisional), RpmB (COG0227), rpmG (PRK00595)

Seq: JTSE01000001.1 (119033 bp)
Overview 1 RT 1: 96909-104424 bp Neighborhood of RT #1 [96909, 104432] lipid_A_lpxH PRK10791 RVT_N RVT-GII GIIM HNH PRK05347 cysS Feature: gene Location: 96909-97631 bp Feature: domain Description: lipid_A_lpxH Location: 96921-97605 bp Feature: domain Description: lipid_A_lpxH Location: 96921-97605 bp Feature: gene Location: 97636-98133 bp Feature: domain Description: PRK10791 Location: 97639-98125 bp Feature: domain Description: PRK10791 Location: 9763 9-98125 bp Feature: gene Location: 98256-99971 bp Feature: RT Description: RVT_N Location: 98310-98553 bp Feature: RT Description: RVT_N Location: 983 10-98553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98598-99234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98598-9923 4 bp Feature: domain Description: GIIM Note: maturase Location: 99297-99531 bp Feature: domain Description: GIIM Note: maturase Location: 99297-9953 1 bp Feature: domain Description: HNH Note: nucleases Location: 99783-99921 bp Feature: domain Description: HNH Note: nucleases Location: 99783 -99921 bp Feature: gene Location: 101355-103040 bp Feature: domain Description: PRK05347 Location: 101385-103032 bp Feature: domain Description: PRK053 47 Location: 1013 85-103 03 2 bp Feature: gene Location: 103050-104432 bp Feature: domain Description: cysS Location: 103053-104424 bp Feature: domain Description: cysS Location: 103 053 -104424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05347 (glutaminyl-tRNA synthetase; Provisional), cysS (TIGR00435), lipid_A_lpxH (TIGR01854), PRK10791 (peptidylprolyl isomerase B), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)