myRT

myRT report for GCA_000794055.1_AZPAE14912

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Seq: JTSD01000023.1 (332536 bp)
Overview 1 RT 1: 227119-233240 bp Neighborhood of RT #1 [227119, 233240] KOG0389 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 227119-227988 bp Feature: gene Location: 228102-229361 bp Feature: domain Description: KOG0389 Location: 228132-228252 bp Feature: domain Description: KOG0389 Location: 2281 32-228252 bp Feature: domain Description: SF2_C_SNF Location: 228801-229197 bp Feature: domain Description: SF2_C_SNF Location: 228801 -2291 97 bp Feature: gene Location: 229429-231147 bp Feature: RT Description: RVT_N Location: 229486-229723 bp Feature: RT Description: RVT_N Location: 229486-229723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229774-230425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229774-230425 bp Feature: domain Description: GIIM Note: maturase Location: 230479-230710 bp Feature: domain Description: GIIM Note: maturase Location: 230479-23071 0 bp Feature: domain Description: HNHc Note: nucleases Location: 230944-231100 bp Feature: domain Description: HNHc Note: nucleases Location: 230944-231 1 00 bp Feature: gene Location: 231744-232799 bp Feature: domain Description: DEXHc_Snf Location: 231963-232227 bp Feature: domain Description: DEXHc_Snf Location: 231 963-232227 bp Feature: gene Location: 232935-233240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: JTSD01000034.1 (224665 bp)
Overview 1 RT 1: 71561-82232 bp Neighborhood of RT #1 [71561, 82297] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 71561-73414 bp Feature: domain Description: PRK05658 Location: 71573-73412 bp Feature: domain Description: PRK05658 Location: 71573-73412 bp Feature: gene Location: 73521-77258 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73629-74286 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 7362 9-742 86 bp Feature: domain Description: PRK09776 Location: 74499-74970 bp Feature: domain Description: PRK09776 Location: 74499-74970 bp Feature: domain Description: PAS Location: 75030-75552 bp Feature: domain Description: PAS Location: 75030-75552 bp Feature: domain Description: PRK10060 Location: 75561-77208 bp Feature: domain Description: PRK10060 Location: 75561-772 08 bp Feature: gene Location: 78339-80024 bp Feature: RT Description: RVT_N Location: 78396-78636 bp Feature: RT Description: RVT_N Location: 78396-78636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78684-79320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78684-7932 0 bp Feature: domain Description: GIIM Note: maturase Location: 79374-79605 bp Feature: domain Description: GIIM Note: maturase Location: 79374-79605 bp Feature: domain Description: HNH Note: nucleases Location: 79857-79995 bp Feature: domain Description: HNH Note: nucleases Location: 79857-79995 bp Feature: gene Location: 80748-81869 bp Feature: domain Description: COG3177 Location: 80766-81858 bp Feature: domain Description: COG3177 Location: 80766-81858 bp Feature: gene Location: 81962-82297 bp Feature: domain Description: NERD Location: 82061-82232 bp Feature: domain Description: NERD Location: 82 061-82 2 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )
NERD (pfam08378)