myRT

myRT report for GCA_000794085.1_AZPAE14933

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Seq: JTRI01000052.1 (151617 bp)
Overview 1 RT 1: 44405-49991 bp Neighborhood of RT #1 [44405, 49991] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 44405-45241 bp Feature: domain Description: HDOD Location: 44408-45236 bp Feature: domain Description: HDOD Location: 44408-45236 bp Feature: gene Location: 45342-46286 bp Feature: domain Description: YgfZ Location: 45351-46251 bp Feature: domain Description: YgfZ Location: 45351 -46251 bp Feature: gene Location: 48009-49328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48012-48588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4801 2-48588 bp Feature: domain Description: YkfC Location: 48786-48942 bp Feature: domain Description: YkfC Location: 48786-48942 bp Feature: domain Description: HNH Note: nucleases Location: 49125-49263 bp Feature: domain Description: HNH Note: nucleases Location: 491 25-49263 bp Feature: gene Location: 49404-49658 bp Feature: domain Description: SdhE Location: 49410-49650 bp Feature: domain Description: SdhE Location: 4941 0-49650 bp Feature: gene Location: 49797-49991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: JTRI01000007.1 (281934 bp)
Overview 1 RT 1: 196809-207542 bp 2 RT 2: 223800-232620 bp Neighborhood of RT #1 [196809, 207544] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [223800, 232649] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 196809-197024 bp Feature: domain Description: NERD Location: 196836-196959 bp Feature: domain Description: NERD Location: 196836-196959 bp Feature: gene Location: 197237-198358 bp Feature: domain Description: COG3177 Location: 197255-198347 bp Feature: domain Description: COG3177 Location: 1972 55-198347 bp Feature: gene Location: 199081-200766 bp Feature: domain Description: RVT_N Location: 199138-199378 bp Feature: domain Description: RVT_N Location: 199138-199378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199426-200062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19942 6-2 00062 bp Feature: domain Description: GIIM Note: maturase Location: 200116-200347 bp Feature: domain Description: GIIM Note: maturase Location: 2 00116-2 00347 bp Feature: domain Description: HNH Note: nucleases Location: 200599-200737 bp Feature: domain Description: HNH Note: nucleases Location: 2 00599-2 00737 bp Feature: gene Location: 201847-205584 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 201955-202612 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 01955-2 02 612 bp Feature: domain Description: PRK09776 Location: 202825-203296 bp Feature: domain Description: PRK09776 Location: 2 02 82 5-2 032 96 bp Feature: domain Description: PAS Location: 203353-203878 bp Feature: domain Description: PAS Location: 2 03353-2 03878 bp Feature: domain Description: PRK10060 Location: 203890-205534 bp Feature: domain Description: PRK10060 Location: 2 03890-2 05534 bp Feature: gene Location: 205691-207544 bp Feature: domain Description: PRK05658 Location: 205703-207542 bp Feature: domain Description: PRK05658 Location: 2 05703-2 07542 bp Feature: gene Location: 223800-225014 bp Feature: domain Description: PRK10770 Location: 223812-225006 bp Feature: domain Description: PRK10770 Location: 2 2 3812 -2 2 5006 bp Feature: gene Location: 225073-227844 bp Feature: domain Description: LptD Location: 225268-227830 bp Feature: domain Description: LptD Location: 2 2 52 68-2 2 7830 bp Feature: gene Location: 227977-229689 bp Feature: domain Description: RVT_N Location: 228034-228277 bp Feature: domain Description: RVT_N Location: 2 2 8034-2 2 82 77 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228322-228958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 832 2 -2 2 8958 bp Feature: domain Description: YkfC Location: 229168-229318 bp Feature: domain Description: YkfC Location: 2 2 9168-2 2 9318 bp Feature: domain Description: HNH Note: nucleases Location: 229495-229633 bp Feature: domain Description: HNH Note: nucleases Location: 2 2 9495-2 2 9633 bp Feature: gene Location: 230962-231978 bp Feature: domain Description: COG3178 Location: 230965-231964 bp Feature: domain Description: COG3178 Location: 2 30965-2 31964 bp Feature: gene Location: 231975-232649 bp Feature: domain Description: NTP_transferase_like_1 Location: 231981-232620 bp Feature: domain Description: NTP_transferase_like_1 Location: 2 31981-2 32 62 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTRI01000020.1 (43218 bp)
Overview 1 RT 1: 4526-8905 bp Neighborhood of RT #1 [4526, 8905] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 4526-5353 bp Feature: domain Description: ABC_phnC Location: 4556-5270 bp Feature: domain Description: ABC_phnC Location: 4556-5270 bp Feature: gene Location: 5696-6337 bp Feature: domain Description: DUF772 Location: 5846-6041 bp Feature: domain Description: DUF772 Location: 5846-6041 bp Feature: gene Location: 6726-7994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6939-7596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693 9-7596 bp Feature: domain Description: GIIM Note: maturase Location: 7674-7896 bp Feature: domain Description: GIIM Note: maturase Location: 7674-7896 bp Feature: gene Location: 8144-8542 bp Feature: gene Location: 8726-8905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: JTRI01000065.1 (35910 bp)
Overview 1 RT 1: 25776-33948 bp Neighborhood of RT #1 [25776, 34142] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25776-27647 bp Feature: domain Description: DUF262 Location: 25824-26592 bp Feature: domain Description: DUF262 Location: 25824 -26592 bp Feature: gene Location: 27651-29432 bp Feature: domain Description: YeeA Location: 28518-29298 bp Feature: domain Description: YeeA Location: 28518-29298 bp Feature: gene Location: 29429-32449 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29924-30395 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29924 -30395 bp Feature: gene Location: 32446-33003 bp Feature: gene Location: 33003-34142 bp Feature: domain Description: AAA_21 Location: 33075-33144 bp Feature: domain Description: AAA_21 Location: 33075-3314 4 bp Feature: domain Description: AAA_21 Location: 33618-33948 bp Feature: domain Description: AAA_21 Location: 33618-3394 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)