myRT

myRT report for GCA_000794405.1_AZPAE14554

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Seq: JTXV01000006.1 (297114 bp)
Overview 1 RT 1: 291258-296817 bp Neighborhood of RT #1 [291258, 297113] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 291258-292802 bp Feature: domain Description: CHD Location: 291474-291888 bp Feature: domain Description: CHD Location: 291 474-291 888 bp Feature: domain Description: CHD Location: 292116-292605 bp Feature: domain Description: CHD Location: 2921 1 6-292605 bp Feature: gene Location: 293886-294065 bp Feature: gene Location: 294797-296065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295010-295667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29501 0-295667 bp Feature: domain Description: GIIM Note: maturase Location: 295745-295967 bp Feature: domain Description: GIIM Note: maturase Location: 295745-295967 bp Feature: gene Location: 296454-297113 bp Feature: domain Description: DUF772 Location: 296622-296817 bp Feature: domain Description: DUF772 Location: 296622-29681 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: JTXV01000003.1 (358385 bp)
Overview 1 RT 1: 273989-283994 bp 2 RT 2: 300252-309072 bp Neighborhood of RT #1 [273989, 283996] HTH_XRE int RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [300252, 309101] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 273989-274228 bp Feature: domain Description: HTH_XRE Location: 274001-274145 bp Feature: domain Description: HTH_XRE Location: 2 74001-2 74145 bp Feature: gene Location: 274233-275402 bp Feature: domain Description: int Location: 274236-275253 bp Feature: domain Description: int Location: 2 742 36-2 752 53 bp Feature: gene Location: 275533-277218 bp Feature: domain Description: RVT_N Location: 275590-275830 bp Feature: domain Description: RVT_N Location: 2 75590-2 75830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275878-276514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 75878-2 76514 bp Feature: domain Description: GIIM Note: maturase Location: 276568-276799 bp Feature: domain Description: GIIM Note: maturase Location: 2 76568-2 76799 bp Feature: domain Description: HNH Note: nucleases Location: 277051-277189 bp Feature: domain Description: HNH Note: nucleases Location: 2 77051-2 77189 bp Feature: gene Location: 278299-282036 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 278407-279064 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 78407-2 79064 bp Feature: domain Description: PRK09776 Location: 279277-279748 bp Feature: domain Description: PRK09776 Location: 2 792 77-2 79748 bp Feature: domain Description: PAS Location: 279805-280330 bp Feature: domain Description: PAS Location: 2 79805-2 80330 bp Feature: domain Description: PRK10060 Location: 280342-281986 bp Feature: domain Description: PRK10060 Location: 2 80342 -2 81986 bp Feature: gene Location: 282143-283996 bp Feature: domain Description: PRK05658 Location: 282155-283994 bp Feature: domain Description: PRK05658 Location: 2 82 155-2 83994 bp Feature: gene Location: 300252-301466 bp Feature: domain Description: PRK10770 Location: 300264-301458 bp Feature: domain Description: PRK10770 Location: 3002 64-301458 bp Feature: gene Location: 301525-304296 bp Feature: domain Description: LptD Location: 301720-304282 bp Feature: domain Description: LptD Location: 30172 0-3042 82 bp Feature: gene Location: 304429-306141 bp Feature: domain Description: RVT_N Location: 304486-304729 bp Feature: domain Description: RVT_N Location: 304486-30472 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304774-305410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304774-305410 bp Feature: domain Description: YkfC Location: 305620-305770 bp Feature: domain Description: YkfC Location: 30562 0-305770 bp Feature: domain Description: HNH Note: nucleases Location: 305947-306085 bp Feature: domain Description: HNH Note: nucleases Location: 305947-306085 bp Feature: gene Location: 307414-308430 bp Feature: domain Description: COG3178 Location: 307417-308416 bp Feature: domain Description: COG3178 Location: 307417-308416 bp Feature: gene Location: 308427-309101 bp Feature: domain Description: NTP_transferase_like_1 Location: 308433-309072 bp Feature: domain Description: NTP_transferase_like_1 Location: 308433-309072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), int (PHA02601), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTXV01000017.1 (35906 bp)
Overview 1 RT 1: 25775-33947 bp Neighborhood of RT #1 [25775, 34141] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25775-27646 bp Feature: domain Description: DUF262 Location: 25823-26591 bp Feature: domain Description: DUF262 Location: 25823 -26591 bp Feature: gene Location: 27650-29431 bp Feature: domain Description: YeeA Location: 28517-29297 bp Feature: domain Description: YeeA Location: 28517-29297 bp Feature: gene Location: 29428-32448 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923-30394 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923 -3 03 94 bp Feature: gene Location: 32445-33002 bp Feature: gene Location: 33002-34141 bp Feature: domain Description: AAA_21 Location: 33074-33143 bp Feature: domain Description: AAA_21 Location: 3 3 074-3 3 143 bp Feature: domain Description: AAA_21 Location: 33617-33947 bp Feature: domain Description: AAA_21 Location: 3 3 617-3 3 947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)