myRT

myRT report for GCA_000794455.1_AZPAE14570

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Seq: JTXS01000033.1 (117859 bp)
Overview 1 RT 1: 1-6329 bp Neighborhood of RT #1 [1, 6616] RVT-UG5 nitrilase COG4127 restrict_AAA_1 restrict_AAA_1 Feature: gene Location: 1-2565 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 22-517 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 22-51 7 bp Feature: domain Description: nitrilase Location: 1879-2461 bp Feature: domain Description: nitrilase Location: 1 879-2461 bp Feature: gene Location: 2935-3927 bp Feature: domain Description: COG4127 Location: 2941-3916 bp Feature: domain Description: COG41 27 Location: 2941 -391 6 bp Feature: gene Location: 4865-6616 bp Feature: domain Description: restrict_AAA_1 Location: 4868-5615 bp Feature: domain Description: restrict_AAA_1 Location: 4868-561 5 bp Feature: domain Description: restrict_AAA_1 Location: 5942-6329 bp Feature: domain Description: restrict_AAA_1 Location: 5942-6329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), restrict_AAA_1 (TIGR04435)

Seq: JTXS01000045.1 (27062 bp)
Overview 1 RT 1: 5481-9556 bp Neighborhood of RT #1 [5481, 9556] DUF3085 RVT-GII GIIM Feature: gene Location: 5481-5846 bp Feature: domain Description: DUF3085 Location: 5547-5817 bp Feature: domain Description: DUF3085 Location: 5547-5817 bp Feature: gene Location: 5912-6709 bp Feature: gene Location: 7049-8248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7214-7829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 14-782 9 bp Feature: domain Description: GIIM Note: maturase Location: 7886-8102 bp Feature: domain Description: GIIM Note: maturase Location: 7886-8102 bp Feature: gene Location: 7841-8485 bp Feature: gene Location: 8840-9556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3085 (pfam11284), RVT-GII, GIIM (pfam08388)

Seq: JTXS01000123.1 (2418 bp)
Overview 1 RT 1: 1-2289 bp Neighborhood of RT #1 [1, 2336] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-189 bp Feature: gene Location: 220-348 bp Feature: gene Location: 618-2336 bp Feature: domain Description: RVT_N Location: 675-912 bp Feature: domain Description: RVT_N Location: 675-912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963 -1614 bp Feature: domain Description: GIIM Note: maturase Location: 1668-1899 bp Feature: domain Description: GIIM Note: maturase Location: 1668-1899 bp Feature: domain Description: HNHc Note: nucleases Location: 2133-2289 bp Feature: domain Description: HNHc Note: nucleases Location: 213 3 -2289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)