myRT

myRT report for GCA_000794545.1_AZPAE14689

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Seq: JTXP01000126.1 (34775 bp)
Overview 1 RT 1: 2-4861 bp Neighborhood of RT #1 [2, 5817] DEXHc_Snf RVT_N RVT-GII GIIM HNHc DEXHc_Snf AdoMet_MTases Feature: gene Location: 2-859 bp Feature: domain Description: DEXHc_Snf Location: 35-194 bp Feature: domain Description: DEXHc_Snf Location: 35-1 94 bp Feature: gene Location: 927-2645 bp Feature: RT Description: RVT_N Location: 984-1221 bp Feature: RT Description: RVT_N Location: 984-1 221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1272-1923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 272-1 923 bp Feature: domain Description: GIIM Note: maturase Location: 1977-2208 bp Feature: domain Description: GIIM Note: maturase Location: 1 977-2208 bp Feature: domain Description: HNHc Note: nucleases Location: 2442-2598 bp Feature: domain Description: HNHc Note: nucleases Location: 2442-2598 bp Feature: gene Location: 3242-4267 bp Feature: domain Description: DEXHc_Snf Location: 3434-3680 bp Feature: domain Description: DEXHc_Snf Location: 3434-3680 bp Feature: gene Location: 4372-5817 bp Feature: domain Description: AdoMet_MTases Location: 4495-4861 bp Feature: domain Description: AdoMet_MTases Location: 4495-4861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), AdoMet_MTases (cl17173), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JTXP01000123.1 (52312 bp)
Overview 1 RT 1: 18273-24178 bp Neighborhood of RT #1 [18273, 24207] PAS_3 Tar DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 18273-19868 bp Feature: domain Description: PAS_3 Location: 18366-18615 bp Feature: domain Description: PAS_3 Location: 18366-18615 bp Feature: domain Description: Tar Location: 18828-19863 bp Feature: domain Description: Tar Location: 1882 8-19863 bp Feature: gene Location: 19997-20140 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 20003-20114 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 0003-2 0114 bp Feature: gene Location: 20320-21993 bp Feature: RT Description: RVT_N Location: 20365-20608 bp Feature: RT Description: RVT_N Location: 2 0365-2 0608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20653-21289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0653-2 12 89 bp Feature: domain Description: GIIM Note: maturase Location: 21343-21574 bp Feature: domain Description: GIIM Note: maturase Location: 2 1343-2 1574 bp Feature: gene Location: 22549-23853 bp Feature: domain Description: LZ_Tnp_IS66 Location: 22651-22864 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 2 651-2 2 864 bp Feature: domain Description: zf-IS66 Location: 22891-23017 bp Feature: domain Description: zf-IS66 Location: 2 2 891-2 3017 bp Feature: domain Description: DDE_Tnp_IS66 Location: 23065-23833 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 3065-2 3833 bp Feature: gene Location: 23917-24207 bp Feature: domain Description: TnpB_IS66 Location: 23920-24178 bp Feature: domain Description: TnpB_IS66 Location: 2 392 0-2 4178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAS_3 (pfam08447), Tar (COG0840), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: JTXP01000022.1 (210452 bp)
Overview 1 RT 1: 125167-135901 bp 2 RT 2: 152160-161009 bp Neighborhood of RT #1 [125167, 135903] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [152160, 161038] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 125167-125502 bp Feature: domain Description: NERD Location: 125266-125437 bp Feature: domain Description: NERD Location: 125266-12543 7 bp Feature: gene Location: 125595-126716 bp Feature: domain Description: COG3177 Location: 125613-126705 bp Feature: domain Description: COG3 177 Location: 125613 -126705 bp Feature: gene Location: 127440-129125 bp Feature: RT Description: RVT_N Location: 127497-127737 bp Feature: RT Description: RVT_N Location: 127497-12773 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127785-128421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127785-128421 bp Feature: domain Description: GIIM Note: maturase Location: 128475-128706 bp Feature: domain Description: GIIM Note: maturase Location: 128475-128706 bp Feature: domain Description: HNH Note: nucleases Location: 128958-129096 bp Feature: domain Description: HNH Note: nucleases Location: 128958-129096 bp Feature: gene Location: 130206-133943 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 130314-130971 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 13 03 14-13 0971 bp Feature: domain Description: PRK09776 Location: 131184-131655 bp Feature: domain Description: PRK09776 Location: 13 1184-13 1655 bp Feature: domain Description: PAS Location: 131715-132237 bp Feature: domain Description: PAS Location: 13 1715-13 223 7 bp Feature: domain Description: PRK10060 Location: 132246-133893 bp Feature: domain Description: PRK10060 Location: 13 2246-13 3 893 bp Feature: gene Location: 134050-135903 bp Feature: domain Description: PRK05658 Location: 134062-135901 bp Feature: domain Description: PRK05658 Location: 13 4062-13 5901 bp Feature: gene Location: 152160-153374 bp Feature: domain Description: PRK10770 Location: 152172-153366 bp Feature: domain Description: PRK10770 Location: 152172-153 3 66 bp Feature: gene Location: 153433-156234 bp Feature: domain Description: LptD Location: 153628-156220 bp Feature: domain Description: LptD Location: 153 628-156220 bp Feature: gene Location: 156367-158079 bp Feature: RT Description: RVT_N Location: 156424-156667 bp Feature: RT Description: RVT_N Location: 156424-156667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156712-157345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156712-1573 45 bp Feature: domain Description: YkfC Location: 157558-157708 bp Feature: domain Description: YkfC Location: 157558-157708 bp Feature: domain Description: HNH Note: nucleases Location: 157885-158023 bp Feature: domain Description: HNH Note: nucleases Location: 157885-158023 bp Feature: gene Location: 159351-160367 bp Feature: domain Description: COG3178 Location: 159354-160353 bp Feature: domain Description: COG3 178 Location: 1593 54-1603 53 bp Feature: gene Location: 160364-161038 bp Feature: domain Description: NTP_transferase_like_1 Location: 160370-161009 bp Feature: domain Description: NTP_transferase_like_1 Location: 1603 70-161009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)