myRT

myRT report for GCA_000794665.1_AZPAE14695

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Seq: JTXJ01000014.1 (238000 bp)
Overview 1 RT 1: 83707-94377 bp Neighborhood of RT #1 [83707, 94442] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 83707-85560 bp Feature: domain Description: PRK05658 Location: 83719-85558 bp Feature: domain Description: PRK05658 Location: 8371 9-85558 bp Feature: gene Location: 85667-89404 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85775-86432 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85775-86432 bp Feature: domain Description: PRK09776 Location: 86645-87116 bp Feature: domain Description: PRK09776 Location: 86645-871 1 6 bp Feature: domain Description: PAS Location: 87161-87698 bp Feature: domain Description: PAS Location: 871 61 -87698 bp Feature: domain Description: PRK10060 Location: 87707-89354 bp Feature: domain Description: PRK1 0060 Location: 87707-89354 bp Feature: gene Location: 90485-92170 bp Feature: RT Description: RVT_N Location: 90542-90782 bp Feature: RT Description: RVT_N Location: 90542-90782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90830-91466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90830-91 466 bp Feature: domain Description: GIIM Note: maturase Location: 91520-91751 bp Feature: domain Description: GIIM Note: maturase Location: 91 520-91 751 bp Feature: domain Description: HNH Note: nucleases Location: 92003-92141 bp Feature: domain Description: HNH Note: nucleases Location: 92003-921 41 bp Feature: gene Location: 92893-94014 bp Feature: domain Description: COG3177 Location: 92911-94003 bp Feature: domain Description: COG31 77 Location: 9291 1 -94003 bp Feature: gene Location: 94107-94442 bp Feature: domain Description: NERD Location: 94206-94377 bp Feature: domain Description: NERD Location: 94206-94377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )
NERD (pfam08378)