myRT

myRT report for GCA_000794885.1_AZPAE14727

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Seq: JTWF01000121.1 (37789 bp)
Overview 1 RT 1: 2-2923 bp Neighborhood of RT #1 [2, 2923] RVT-GII GIIM Feature: gene Location: 2-208 bp Feature: gene Location: 744-2012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957-1 61 4 bp Feature: domain Description: GIIM Note: maturase Location: 1692-1914 bp Feature: domain Description: GIIM Note: maturase Location: 1 692-1 91 4 bp Feature: gene Location: 2162-2560 bp Feature: gene Location: 2744-2923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JTWF01000080.1 (35908 bp)
Overview 1 RT 1: 1768-9079 bp Neighborhood of RT #1 [1768, 10134] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1768-2907 bp Feature: domain Description: AAA_21 Location: 1840-1909 bp Feature: domain Description: AAA_2 1 Location: 1840-1909 bp Feature: domain Description: AAA_21 Location: 2383-2713 bp Feature: domain Description: AAA_2 1 Location: 2 383-2 713 bp Feature: gene Location: 2907-3464 bp Feature: gene Location: 3461-6481 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3956-4427 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3956-442 7 bp Feature: gene Location: 6478-8259 bp Feature: domain Description: YeeA Location: 7345-8125 bp Feature: domain Description: YeeA Location: 7345-812 5 bp Feature: gene Location: 8263-10134 bp Feature: domain Description: DUF262 Location: 8311-9079 bp Feature: domain Description: DUF2 62 Location: 8311-9079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: JTWF01000079.1 (68994 bp)
Overview 1 RT 1: 28520-34106 bp Neighborhood of RT #1 [28520, 34106] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 28520-29356 bp Feature: domain Description: HDOD Location: 28523-29351 bp Feature: domain Description: HDOD Location: 28523 -293 51 bp Feature: gene Location: 29457-30401 bp Feature: domain Description: YgfZ Location: 29466-30366 bp Feature: domain Description: YgfZ Location: 29466-3 03 66 bp Feature: gene Location: 32124-33443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32127-32703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2127-3 2703 bp Feature: domain Description: YkfC Location: 32901-33057 bp Feature: domain Description: YkfC Location: 3 2901-3 3 057 bp Feature: domain Description: HNH Note: nucleases Location: 33240-33378 bp Feature: domain Description: HNH Note: nucleases Location: 3 3 240-3 3 3 78 bp Feature: gene Location: 33519-33773 bp Feature: domain Description: SdhE Location: 33525-33765 bp Feature: domain Description: SdhE Location: 3 3 525-3 3 765 bp Feature: gene Location: 33912-34106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: JTWF01000043.1 (141375 bp)
Overview 1 RT 1: 49426-58267 bp 2 RT 2: 74531-88452 bp Neighborhood of RT #1 [49426, 58275] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74531, 88607] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 IMPa_N_2 IMPa_helical Peptidase_M60 Feature: gene Location: 49426-50100 bp Feature: domain Description: NTP_transferase_like_1 Location: 49432-50071 bp Feature: domain Description: NTP_transferase_like_1 Location: 4 94 32-50071 bp Feature: gene Location: 50097-51113 bp Feature: domain Description: COG3178 Location: 50100-51099 bp Feature: domain Description: COG3178 Location: 50100-51099 bp Feature: gene Location: 52386-54098 bp Feature: domain Description: RVT_N Location: 52443-52686 bp Feature: domain Description: RVT_N Location: 524 4 3-52686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52731-53367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52731-53367 bp Feature: domain Description: YkfC Location: 53577-53727 bp Feature: domain Description: YkfC Location: 53577-53727 bp Feature: domain Description: HNH Note: nucleases Location: 53904-54042 bp Feature: domain Description: HNH Note: nucleases Location: 53904 -54 04 2 bp Feature: gene Location: 54231-57002 bp Feature: domain Description: LptD Location: 54426-56988 bp Feature: domain Description: LptD Location: 54 4 26-56988 bp Feature: gene Location: 57061-58275 bp Feature: domain Description: PRK10770 Location: 57073-58267 bp Feature: domain Description: PRK10770 Location: 57073-58267 bp Feature: gene Location: 74531-76384 bp Feature: domain Description: PRK05658 Location: 74543-76382 bp Feature: domain Description: PRK05658 Location: 74 54 3-76382 bp Feature: gene Location: 76491-80228 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76599-77256 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76599-77256 bp Feature: domain Description: PRK09776 Location: 77469-77940 bp Feature: domain Description: PRK09776 Location: 774 69-7794 0 bp Feature: domain Description: PAS Location: 77997-78522 bp Feature: domain Description: PAS Location: 77997-78522 bp Feature: domain Description: PRK10060 Location: 78534-80178 bp Feature: domain Description: PRK10060 Location: 78534 -80178 bp Feature: gene Location: 81309-82994 bp Feature: domain Description: RVT_N Location: 81366-81606 bp Feature: domain Description: RVT_N Location: 81366-81606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81654-82290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81654 -82290 bp Feature: domain Description: GIIM Note: maturase Location: 82344-82575 bp Feature: domain Description: GIIM Note: maturase Location: 8234 4 -82575 bp Feature: domain Description: HNH Note: nucleases Location: 82827-82965 bp Feature: domain Description: HNH Note: nucleases Location: 82827-82965 bp Feature: gene Location: 83717-84838 bp Feature: domain Description: COG3177 Location: 83735-84827 bp Feature: domain Description: COG3177 Location: 83735-84 827 bp Feature: gene Location: 85881-88607 bp Feature: domain Description: IMPa_N_2 Location: 86088-86670 bp Feature: domain Description: IMPa_N_2 Location: 86088-86670 bp Feature: domain Description: IMPa_helical Location: 86751-87078 bp Feature: domain Description: IMPa_helical Location: 86751-87078 bp Feature: domain Description: Peptidase_M60 Location: 87522-88452 bp Feature: domain Description: Peptidase_M60 Location: 87522-884 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402)