myRT

myRT report for GCA_000795115.1_AZPAE14815

Download annotations/find similar RTs

Seq: JTVT01000030.1 (151053 bp)
Overview 1 RT 1: 112251-116630 bp Neighborhood of RT #1 [112251, 116630] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 112251-113078 bp Feature: domain Description: ABC_phnC Location: 112281-112995 bp Feature: domain Description: ABC_phnC Location: 1 1 2281 -1 1 2995 bp Feature: gene Location: 113421-114062 bp Feature: domain Description: DUF772 Location: 113571-113766 bp Feature: domain Description: DUF772 Location: 1 1 3571 -1 1 3766 bp Feature: gene Location: 114451-115719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114664-115321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4664-1 1 5321 bp Feature: domain Description: GIIM Note: maturase Location: 115399-115621 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 5399-1 1 5621 bp Feature: gene Location: 115869-116267 bp Feature: gene Location: 116451-116630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: JTVT01000019.1 (103844 bp)
Overview 1 RT 1: 50100-58287 bp 2 RT 2: 74556-84481 bp Neighborhood of RT #1 [50100, 58295] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74556, 84564] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH int HTH_XRE Feature: gene Location: 50100-51116 bp Feature: domain Description: COG3178 Location: 50103-51102 bp Feature: domain Description: COG3178 Location: 50103-51102 bp Feature: gene Location: 51413-51547 bp Feature: gene Location: 52388-54100 bp Feature: domain Description: RVT_N Location: 52445-52688 bp Feature: domain Description: RVT_N Location: 52 445-52 688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52733-53369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 733-53369 bp Feature: domain Description: YkfC Location: 53579-53729 bp Feature: domain Description: YkfC Location: 53579-5372 9 bp Feature: domain Description: HNH Note: nucleases Location: 53906-54044 bp Feature: domain Description: HNH Note: nucleases Location: 53906-54044 bp Feature: gene Location: 54233-57022 bp Feature: domain Description: LptD Location: 54428-57008 bp Feature: domain Description: LptD Location: 5442 8-57008 bp Feature: gene Location: 57081-58295 bp Feature: domain Description: PRK10770 Location: 57093-58287 bp Feature: domain Description: PRK10770 Location: 57093-582 87 bp Feature: gene Location: 74556-76409 bp Feature: domain Description: PRK05658 Location: 74568-76407 bp Feature: domain Description: PRK05658 Location: 74568-76407 bp Feature: gene Location: 76516-80253 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76624-77281 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 7662 4-772 81 bp Feature: domain Description: PRK09776 Location: 77494-77965 bp Feature: domain Description: PRK09776 Location: 77494-77965 bp Feature: domain Description: PAS Location: 78055-78547 bp Feature: domain Description: PAS Location: 78055-78547 bp Feature: domain Description: PRK10060 Location: 78556-80203 bp Feature: domain Description: PRK10060 Location: 78556-802 03 bp Feature: gene Location: 81334-83019 bp Feature: domain Description: RVT_N Location: 81391-81631 bp Feature: domain Description: RVT_N Location: 81391-81631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81679-82315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81679-82 315 bp Feature: domain Description: GIIM Note: maturase Location: 82369-82600 bp Feature: domain Description: GIIM Note: maturase Location: 82 369-82 600 bp Feature: domain Description: HNH Note: nucleases Location: 82852-82990 bp Feature: domain Description: HNH Note: nucleases Location: 82 852 -82 990 bp Feature: gene Location: 83136-84320 bp Feature: domain Description: int Location: 83139-84156 bp Feature: domain Description: int Location: 83139-84156 bp Feature: gene Location: 84325-84564 bp Feature: domain Description: HTH_XRE Location: 84337-84481 bp Feature: domain Description: HTH_XRE Location: 84337-84481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), int (PHA02601), HTH_XRE (smart00530)

Seq: JTVT01000036.1 (87878 bp)
Overview 1 RT 1: 37774-40433 bp Neighborhood of RT #1 [37774, 40459] RVT-UG17 HipB Feature: gene Location: 37774-39138 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 38002-38605 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3 8002-3 8605 bp Feature: gene Location: 39667-40092 bp Feature: gene Location: 40178-40459 bp Feature: domain Description: HipB Location: 40199-40433 bp Feature: domain Description: HipB Location: 40199-4043 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, HipB (COG1396)