myRT

myRT report for GCA_000795145.1_AZPAE14816

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Seq: JTVS01000091.1 (2418 bp)
Overview 1 RT 1: 1-2289 bp Neighborhood of RT #1 [1, 2336] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-189 bp Feature: gene Location: 220-348 bp Feature: gene Location: 618-2336 bp Feature: RT Description: RVT_N Location: 675-912 bp Feature: RT Description: RVT_N Location: 675-91 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1 61 4 bp Feature: domain Description: GIIM Note: maturase Location: 1668-1899 bp Feature: domain Description: GIIM Note: maturase Location: 1 668-1 899 bp Feature: domain Description: HNHc Note: nucleases Location: 2133-2289 bp Feature: domain Description: HNHc Note: nucleases Location: 21 33-2289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JTVS01000045.1 (70884 bp)
Overview 1 RT 1: 19202-23498 bp Neighborhood of RT #1 [19202, 23581] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 19202-19381 bp Feature: gene Location: 19565-19963 bp Feature: gene Location: 20113-21381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20326-20983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 032 6-2 0983 bp Feature: domain Description: GIIM Note: maturase Location: 21061-21283 bp Feature: domain Description: GIIM Note: maturase Location: 2 1061-2 12 83 bp Feature: gene Location: 21770-22411 bp Feature: domain Description: DUF772 Location: 21920-22115 bp Feature: domain Description: DUF772 Location: 2 192 0-2 2 115 bp Feature: gene Location: 22754-23581 bp Feature: domain Description: ABC_phnC Location: 22784-23498 bp Feature: domain Description: ABC_phnC Location: 2 2 784-2 3498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: JTVS01000044.1 (203266 bp)
Overview 1 RT 1: 1-2617 bp Neighborhood of RT #1 [1, 2628] RVT-GII GIIM HNH COG3177 Feature: gene Location: 1-786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25-82 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25-82 bp Feature: domain Description: GIIM Note: maturase Location: 136-367 bp Feature: domain Description: GIIM Note: maturase Location: 13 6-3 67 bp Feature: domain Description: HNH Note: nucleases Location: 619-757 bp Feature: domain Description: HNH Note: nucleases Location: 619-757 bp Feature: gene Location: 1507-2628 bp Feature: domain Description: COG3177 Location: 1525-2617 bp Feature: domain Description: COG3 177 Location: 1525-2617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JTVS01000039.1 (82359 bp)
Overview 1 RT 1: 49491-58370 bp 2 RT 2: 74635-82337 bp Neighborhood of RT #1 [49491, 58378] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74635, 82351] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII Feature: gene Location: 49491-50165 bp Feature: domain Description: NTP_transferase_like_1 Location: 49497-50136 bp Feature: domain Description: NTP_transferase_like_1 Location: 4 94 97-50136 bp Feature: gene Location: 50162-51178 bp Feature: domain Description: COG3178 Location: 50165-51164 bp Feature: domain Description: COG3178 Location: 50165-51164 bp Feature: gene Location: 52450-54162 bp Feature: RT Description: RVT_N Location: 52507-52750 bp Feature: RT Description: RVT_N Location: 52507-52750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52795-53431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52795-534 31 bp Feature: domain Description: YkfC Location: 53638-53791 bp Feature: domain Description: YkfC Location: 53638-53791 bp Feature: domain Description: HNH Note: nucleases Location: 53968-54106 bp Feature: domain Description: HNH Note: nucleases Location: 53968-54 106 bp Feature: gene Location: 54295-57105 bp Feature: domain Description: LptD Location: 54490-57091 bp Feature: domain Description: LptD Location: 54 4 90-57091 bp Feature: gene Location: 57164-58378 bp Feature: domain Description: PRK10770 Location: 57176-58370 bp Feature: domain Description: PRK10770 Location: 57176-58370 bp Feature: gene Location: 74635-76488 bp Feature: domain Description: PRK05658 Location: 74647-76486 bp Feature: domain Description: PRK05658 Location: 74 64 7-764 86 bp Feature: gene Location: 76595-80332 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76703-77360 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76703-77360 bp Feature: domain Description: PRK09776 Location: 77573-78044 bp Feature: domain Description: PRK09776 Location: 77573-7804 4 bp Feature: domain Description: PAS Location: 78089-78626 bp Feature: domain Description: PAS Location: 78089-78626 bp Feature: domain Description: PRK10060 Location: 78635-80282 bp Feature: domain Description: PRK10060 Location: 78635-80282 bp Feature: gene Location: 81413-82351 bp Feature: RT Description: RVT_N Location: 81470-81710 bp Feature: RT Description: RVT_N Location: 814 70-81710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81758-82337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81758-82337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)