myRT

myRT report for GCA_000795535.1_AZPAE14716

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Seq: JTWQ01000031.1 (150884 bp)
Overview 1 RT 1: 54012-64320 bp 2 RT 2: 80579-89428 bp Neighborhood of RT #1 [54012, 64322] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [80579, 89457] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 54012-55133 bp Feature: domain Description: COG3177 Location: 54030-55122 bp Feature: domain Description: COG31 77 Location: 54030-551 22 bp Feature: gene Location: 55395-55556 bp Feature: gene Location: 55859-57544 bp Feature: RT Description: RVT_N Location: 55916-56156 bp Feature: RT Description: RVT_N Location: 5591 6-561 56 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56204-56840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56204-56840 bp Feature: domain Description: GIIM Note: maturase Location: 56894-57125 bp Feature: domain Description: GIIM Note: maturase Location: 56894-571 25 bp Feature: domain Description: HNH Note: nucleases Location: 57377-57515 bp Feature: domain Description: HNH Note: nucleases Location: 57377-5751 5 bp Feature: gene Location: 58625-62362 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 58733-59390 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 58733-59390 bp Feature: domain Description: PRK09776 Location: 59603-60074 bp Feature: domain Description: PRK09776 Location: 59603-60074 bp Feature: domain Description: PAS Location: 60119-60656 bp Feature: domain Description: PAS Location: 601 1 9-60656 bp Feature: domain Description: PRK10060 Location: 60665-62312 bp Feature: domain Description: PRK1 0060 Location: 60665-6231 2 bp Feature: gene Location: 62469-64322 bp Feature: domain Description: PRK05658 Location: 62481-64320 bp Feature: domain Description: PRK05658 Location: 62481 -64320 bp Feature: gene Location: 80579-81793 bp Feature: domain Description: PRK10770 Location: 80591-81785 bp Feature: domain Description: PRK1 0770 Location: 80591 -81 785 bp Feature: gene Location: 81852-84653 bp Feature: domain Description: LptD Location: 82047-84639 bp Feature: domain Description: LptD Location: 82047-84639 bp Feature: gene Location: 84786-86498 bp Feature: RT Description: RVT_N Location: 84843-85086 bp Feature: RT Description: RVT_N Location: 84843-85086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85131-85764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 851 31 -85764 bp Feature: domain Description: YkfC Location: 85977-86127 bp Feature: domain Description: YkfC Location: 85977-861 27 bp Feature: domain Description: HNH Note: nucleases Location: 86304-86442 bp Feature: domain Description: HNH Note: nucleases Location: 86304-86442 bp Feature: gene Location: 87770-88786 bp Feature: domain Description: COG3178 Location: 87773-88772 bp Feature: domain Description: COG31 78 Location: 87773-88772 bp Feature: gene Location: 88783-89457 bp Feature: domain Description: NTP_transferase_like_1 Location: 88789-89428 bp Feature: domain Description: NTP_transferase_like_1 Location: 88789-89428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTWQ01000094.1 (3864 bp)
Overview 1 RT 1: 65-3655 bp Neighborhood of RT #1 [65, 3655] RVT-GII GIIM IS5 Feature: gene Location: 65-1333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 78-935 bp Feature: domain Description: GIIM Note: maturase Location: 1013-1235 bp Feature: domain Description: GIIM Note: maturase Location: 1013-12 35 bp Feature: gene Location: 1826-2365 bp Feature: domain Description: IS5 Location: 2015-2342 bp Feature: domain Description: IS5 Location: 2 015-2 342 bp Feature: gene Location: 3527-3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388)