myRT

myRT report for GCA_000795665.1_AZPAE13877

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Seq: JTZE01000004.1 Pseudomonas aeruginosa strain AZPAE13877 AZPAE13877_contig_4, whole genome shotgun sequence (373148 bp)
Overview 1 RT 1: 83808-94105 bp Neighborhood of RT #1 [83808, 94116] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 83808-85661 bp Feature: domain Description: PRK05658 Location: 83820-85659 bp Feature: domain Description: PRK05658 Location: 83820-85659 bp Feature: gene Location: 85768-89505 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85876-86533 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85876-86533 bp Feature: domain Description: PRK09776 Location: 86746-87217 bp Feature: domain Description: PRK09776 Location: 86746-8721 7 bp Feature: domain Description: PAS Location: 87289-87799 bp Feature: domain Description: PAS Location: 87289-87799 bp Feature: domain Description: PRK10060 Location: 87808-89455 bp Feature: domain Description: PRK1 0060 Location: 87808-89455 bp Feature: gene Location: 90586-92271 bp Feature: RT Description: RVT_N Location: 90643-90883 bp Feature: RT Description: RVT_N Location: 90643-90883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90931-91567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90931 -91 567 bp Feature: domain Description: GIIM Note: maturase Location: 91621-91852 bp Feature: domain Description: GIIM Note: maturase Location: 91 621 -91 852 bp Feature: domain Description: HNH Note: nucleases Location: 92104-92242 bp Feature: domain Description: HNH Note: nucleases Location: 921 04-92242 bp Feature: gene Location: 92599-92736 bp Feature: gene Location: 92995-94116 bp Feature: domain Description: COG3177 Location: 93013-94105 bp Feature: domain Description: COG31 77 Location: 9301 3-941 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )