myRT

myRT report for GCA_000795705.1_AZPAE14723

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Seq: JTWJ01000023.1 (451848 bp)
Overview 1 RT 1: 327067-332800 bp Neighborhood of RT #1 [327067, 332800] SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 327067-327603 bp Feature: gene Location: 327662-328822 bp Feature: domain Description: SF2_C_SNF Location: 328280-328658 bp Feature: domain Description: SF2_C_SNF Location: 328280-328658 bp Feature: gene Location: 328989-330707 bp Feature: RT Description: RVT_N Location: 329046-329283 bp Feature: RT Description: RVT_N Location: 329046-329283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329334-329985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329334-329985 bp Feature: domain Description: GIIM Note: maturase Location: 330039-330270 bp Feature: domain Description: GIIM Note: maturase Location: 330039-330270 bp Feature: domain Description: HNHc Note: nucleases Location: 330504-330660 bp Feature: domain Description: HNHc Note: nucleases Location: 330504-330660 bp Feature: gene Location: 331304-332359 bp Feature: domain Description: DEXHc_Snf Location: 331523-331784 bp Feature: domain Description: DEXHc_Snf Location: 331 523-331 784 bp Feature: gene Location: 332495-332800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: JTWJ01000022.1 (222556 bp)
Overview 1 RT 1: 137271-148005 bp 2 RT 2: 164264-173113 bp Neighborhood of RT #1 [137271, 148007] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [164264, 173142] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 137271-137606 bp Feature: domain Description: NERD Location: 137370-137541 bp Feature: domain Description: NERD Location: 137370-137541 bp Feature: gene Location: 137699-138820 bp Feature: domain Description: COG3177 Location: 137717-138809 bp Feature: domain Description: COG3177 Location: 137717-138809 bp Feature: gene Location: 139544-141229 bp Feature: RT Description: RVT_N Location: 139601-139841 bp Feature: RT Description: RVT_N Location: 139601-139841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139889-140525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139889-14052 5 bp Feature: domain Description: GIIM Note: maturase Location: 140579-140810 bp Feature: domain Description: GIIM Note: maturase Location: 140579-140810 bp Feature: domain Description: HNH Note: nucleases Location: 141062-141200 bp Feature: domain Description: HNH Note: nucleases Location: 141062 -1412 00 bp Feature: gene Location: 142310-146047 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 142418-143075 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 142 418-143075 bp Feature: domain Description: PRK09776 Location: 143288-143759 bp Feature: domain Description: PRK09776 Location: 1432 88-143759 bp Feature: domain Description: PAS Location: 143819-144341 bp Feature: domain Description: PAS Location: 143819-144341 bp Feature: domain Description: PRK10060 Location: 144350-145997 bp Feature: domain Description: PRK10060 Location: 144350-145997 bp Feature: gene Location: 146154-148007 bp Feature: domain Description: PRK05658 Location: 146166-148005 bp Feature: domain Description: PRK05658 Location: 146166-148005 bp Feature: gene Location: 164264-165478 bp Feature: domain Description: PRK10770 Location: 164276-165470 bp Feature: domain Description: PRK10770 Location: 1642 76-165470 bp Feature: gene Location: 165537-168338 bp Feature: domain Description: LptD Location: 165732-168324 bp Feature: domain Description: LptD Location: 165732 -16832 4 bp Feature: gene Location: 168471-170183 bp Feature: RT Description: RVT_N Location: 168528-168771 bp Feature: RT Description: RVT_N Location: 16852 8-168771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168816-169449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168816-169449 bp Feature: domain Description: YkfC Location: 169662-169812 bp Feature: domain Description: YkfC Location: 169662 -169812 bp Feature: domain Description: HNH Note: nucleases Location: 169989-170127 bp Feature: domain Description: HNH Note: nucleases Location: 169989-17012 7 bp Feature: gene Location: 171455-172471 bp Feature: domain Description: COG3178 Location: 171458-172457 bp Feature: domain Description: COG3178 Location: 171458-172 457 bp Feature: gene Location: 172468-173142 bp Feature: domain Description: NTP_transferase_like_1 Location: 172474-173113 bp Feature: domain Description: NTP_transferase_like_1 Location: 172 474-173113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)