myRT

myRT report for GCA_000795785.1_AZPAE14359

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Seq: JTYZ01000001.1 Pseudomonas aeruginosa strain AZPAE14359 AZPAE14359_contig_1, whole genome shotgun sequence (706967 bp)
Overview 1 RT 1: 63611-72472 bp 2 RT 2: 88736-99035 bp Neighborhood of RT #1 [63611, 72480] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [88736, 99046] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 63611-64285 bp Feature: domain Description: NTP_transferase_like_1 Location: 63617-64256 bp Feature: domain Description: NTP_transferase_like_1 Location: 6361 7-64256 bp Feature: gene Location: 64282-65298 bp Feature: domain Description: COG3178 Location: 64285-65284 bp Feature: domain Description: COG31 78 Location: 64285-65284 bp Feature: gene Location: 66570-68282 bp Feature: RT Description: RVT_N Location: 66627-66870 bp Feature: RT Description: RVT_N Location: 66627-66870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66915-67548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6691 5-67548 bp Feature: domain Description: YkfC Location: 67761-67911 bp Feature: domain Description: YkfC Location: 67761 -6791 1 bp Feature: domain Description: HNH Note: nucleases Location: 68088-68226 bp Feature: domain Description: HNH Note: nucleases Location: 68088-68226 bp Feature: gene Location: 68415-71207 bp Feature: domain Description: LptD Location: 68610-71193 bp Feature: domain Description: LptD Location: 6861 0-71 1 93 bp Feature: gene Location: 71266-72480 bp Feature: domain Description: PRK10770 Location: 71278-72472 bp Feature: domain Description: PRK1 0770 Location: 71 278-72472 bp Feature: gene Location: 88736-90589 bp Feature: domain Description: PRK05658 Location: 88748-90587 bp Feature: domain Description: PRK05658 Location: 88748-90587 bp Feature: gene Location: 90696-94433 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90804-91461 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90804-91 461 bp Feature: domain Description: PRK09776 Location: 91674-92145 bp Feature: domain Description: PRK09776 Location: 91 674-921 45 bp Feature: domain Description: PAS Location: 92196-92727 bp Feature: domain Description: PAS Location: 921 96-92727 bp Feature: domain Description: PRK10060 Location: 92736-94383 bp Feature: domain Description: PRK1 0060 Location: 92736-94383 bp Feature: gene Location: 95514-97199 bp Feature: RT Description: RVT_N Location: 95571-95811 bp Feature: RT Description: RVT_N Location: 95571 -9581 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95859-96495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95859-96495 bp Feature: domain Description: GIIM Note: maturase Location: 96549-96780 bp Feature: domain Description: GIIM Note: maturase Location: 96549-96780 bp Feature: domain Description: HNH Note: nucleases Location: 97032-97170 bp Feature: domain Description: HNH Note: nucleases Location: 97032-971 70 bp Feature: gene Location: 97502-97663 bp Feature: gene Location: 97925-99046 bp Feature: domain Description: COG3177 Location: 97943-99035 bp Feature: domain Description: COG31 77 Location: 97943-99035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: JTYZ01000026.1 Pseudomonas aeruginosa strain AZPAE14359 AZPAE14359_contig_26, whole genome shotgun sequence (157418 bp)
Overview 1 RT 1: 39985-45844 bp Neighborhood of RT #1 [39985, 45844] conj_PilL KOG0389 SF2_C_SNF RVT_N RVT-GII YkfC HNHc DEXHc_Snf Feature: gene Location: 39985-40509 bp Feature: domain Description: conj_PilL Location: 40093-40402 bp Feature: domain Description: conj_PilL Location: 40093-40402 bp Feature: gene Location: 40723-42090 bp Feature: domain Description: KOG0389 Location: 40855-40984 bp Feature: domain Description: KOG0389 Location: 40855-40984 bp Feature: domain Description: SF2_C_SNF Location: 41530-41926 bp Feature: domain Description: SF2 _C_SNF Location: 41530-4192 6 bp Feature: gene Location: 42185-43690 bp Feature: RT Description: RVT_N Location: 42188-42290 bp Feature: RT Description: RVT_N Location: 42 188-42 2 90 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42335-42977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 335-42 977 bp Feature: domain Description: YkfC Location: 42977-43286 bp Feature: domain Description: YkfC Location: 42 977-432 86 bp Feature: domain Description: HNHc Note: nucleases Location: 43481-43643 bp Feature: domain Description: HNHc Note: nucleases Location: 43481-43643 bp Feature: gene Location: 44482-45402 bp Feature: domain Description: DEXHc_Snf Location: 44701-44956 bp Feature: domain Description: DEXHc_Snf Location: 44701-44956 bp Feature: gene Location: 45539-45844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_PilL (TIGR03748), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DEXHc_Snf (cd17919)