myRT

myRT report for GCA_000796005.1_AZPAE14393

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Seq: JTYT01000030.1 (156535 bp)
Overview 1 RT 1: 40113-45972 bp Neighborhood of RT #1 [40113, 45972] conj_PilL KOG0389 SF2_C_SNF RVT_N RVT-GII YkfC HNHc DEXHc_Snf Feature: gene Location: 40113-40637 bp Feature: domain Description: conj_PilL Location: 40221-40530 bp Feature: domain Description: conj_PilL Location: 40221 -40530 bp Feature: gene Location: 40851-42218 bp Feature: domain Description: KOG0389 Location: 40983-41112 bp Feature: domain Description: KOG0389 Location: 40983-41 1 1 2 bp Feature: domain Description: SF2_C_SNF Location: 41658-42054 bp Feature: domain Description: SF2_C_SNF Location: 41 658-42054 bp Feature: gene Location: 42313-43818 bp Feature: RT Description: RVT_N Location: 42316-42418 bp Feature: RT Description: RVT_N Location: 4231 6-4241 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42463-43105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42463-431 05 bp Feature: domain Description: YkfC Location: 43105-43414 bp Feature: domain Description: YkfC Location: 431 05-4341 4 bp Feature: domain Description: HNHc Note: nucleases Location: 43609-43771 bp Feature: domain Description: HNHc Note: nucleases Location: 43609-43771 bp Feature: gene Location: 44610-45530 bp Feature: domain Description: DEXHc_Snf Location: 44829-45084 bp Feature: domain Description: DEXHc_Snf Location: 44829-45084 bp Feature: gene Location: 45667-45972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_PilL (TIGR03748), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: JTYT01000005.1 (527437 bp)
Overview 1 RT 1: 491352-501660 bp 2 RT 2: 517918-526759 bp Neighborhood of RT #1 [491352, 501662] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [517918, 526788] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 491352-492473 bp Feature: domain Description: COG3177 Location: 491370-492462 bp Feature: domain Description: COG3177 Location: 491370-492 462 bp Feature: gene Location: 492735-492896 bp Feature: gene Location: 493199-494884 bp Feature: RT Description: RVT_N Location: 493256-493496 bp Feature: RT Description: RVT_N Location: 4932 56-493496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 493544-494180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 493544-494180 bp Feature: domain Description: GIIM Note: maturase Location: 494234-494465 bp Feature: domain Description: GIIM Note: maturase Location: 4942 34-494465 bp Feature: domain Description: HNH Note: nucleases Location: 494717-494855 bp Feature: domain Description: HNH Note: nucleases Location: 494717-494855 bp Feature: gene Location: 495965-499702 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 496073-496730 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 496073-496730 bp Feature: domain Description: PRK09776 Location: 496943-497414 bp Feature: domain Description: PRK09776 Location: 496943-497414 bp Feature: domain Description: PAS Location: 497465-497996 bp Feature: domain Description: PAS Location: 497465-497996 bp Feature: domain Description: PRK10060 Location: 498005-499652 bp Feature: domain Description: PRK10060 Location: 498005-499652 bp Feature: gene Location: 499809-501662 bp Feature: domain Description: PRK05658 Location: 499821-501660 bp Feature: domain Description: PRK05658 Location: 49982 1-501660 bp Feature: gene Location: 517918-519132 bp Feature: domain Description: PRK10770 Location: 517930-519124 bp Feature: domain Description: PRK10770 Location: 517930-51912 4 bp Feature: gene Location: 519191-521983 bp Feature: domain Description: LptD Location: 519386-521969 bp Feature: domain Description: LptD Location: 519386-52 1969 bp Feature: gene Location: 522116-523828 bp Feature: RT Description: RVT_N Location: 522173-522416 bp Feature: RT Description: RVT_N Location: 52 2 173-52 2 416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 522461-523097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 2 461-52 3097 bp Feature: domain Description: YkfC Location: 523304-523457 bp Feature: domain Description: YkfC Location: 52 3304-52 3457 bp Feature: domain Description: HNH Note: nucleases Location: 523634-523772 bp Feature: domain Description: HNH Note: nucleases Location: 52 3634-52 3772 bp Feature: gene Location: 525101-526117 bp Feature: domain Description: COG3178 Location: 525104-526103 bp Feature: domain Description: COG3178 Location: 52 5104-52 6103 bp Feature: gene Location: 526114-526788 bp Feature: domain Description: NTP_transferase_like_1 Location: 526120-526759 bp Feature: domain Description: NTP_transferase_like_1 Location: 52 612 0-52 6759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)