myRT

myRT report for GCA_000796145.1_AZPAE14404

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Seq: JTYN01000005.1 Pseudomonas aeruginosa strain AZPAE14404 AZPAE14404_contig_5, whole genome shotgun sequence (436857 bp)
Overview 1 RT 1: 51294-60155 bp 2 RT 2: 76420-87090 bp Neighborhood of RT #1 [51294, 60163] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [76420, 87155] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 51294-51968 bp Feature: domain Description: NTP_transferase_like_1 Location: 51300-51939 bp Feature: domain Description: NTP_transferase_like_1 Location: 51 300-51 939 bp Feature: gene Location: 51965-52981 bp Feature: domain Description: COG3178 Location: 51968-52967 bp Feature: domain Description: COG31 78 Location: 51 968-52967 bp Feature: gene Location: 54253-55965 bp Feature: RT Description: RVT_N Location: 54310-54553 bp Feature: RT Description: RVT_N Location: 5431 0-54553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54598-55234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54598-55234 bp Feature: domain Description: YkfC Location: 55444-55594 bp Feature: domain Description: YkfC Location: 55444-55594 bp Feature: domain Description: HNH Note: nucleases Location: 55771-55909 bp Feature: domain Description: HNH Note: nucleases Location: 55771 -55909 bp Feature: gene Location: 56098-58890 bp Feature: domain Description: LptD Location: 56293-58876 bp Feature: domain Description: LptD Location: 56293-58876 bp Feature: gene Location: 58949-60163 bp Feature: domain Description: PRK10770 Location: 58961-60155 bp Feature: domain Description: PRK1 0770 Location: 58961 -601 55 bp Feature: gene Location: 76420-78273 bp Feature: domain Description: PRK05658 Location: 76432-78271 bp Feature: domain Description: PRK05658 Location: 76432-78271 bp Feature: gene Location: 78380-82117 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 78488-79145 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 78488-791 45 bp Feature: domain Description: PRK09776 Location: 79358-79829 bp Feature: domain Description: PRK09776 Location: 79358-79829 bp Feature: domain Description: PAS Location: 79889-80411 bp Feature: domain Description: PAS Location: 79889-8041 1 bp Feature: domain Description: PRK10060 Location: 80420-82067 bp Feature: domain Description: PRK1 0060 Location: 80420-82067 bp Feature: gene Location: 83198-84883 bp Feature: RT Description: RVT_N Location: 83255-83495 bp Feature: RT Description: RVT_N Location: 83255-83495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83543-84179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83543-841 79 bp Feature: domain Description: GIIM Note: maturase Location: 84233-84464 bp Feature: domain Description: GIIM Note: maturase Location: 84233-84464 bp Feature: domain Description: HNH Note: nucleases Location: 84716-84854 bp Feature: domain Description: HNH Note: nucleases Location: 8471 6-84854 bp Feature: gene Location: 85606-86727 bp Feature: domain Description: COG3177 Location: 85624-86716 bp Feature: domain Description: COG31 77 Location: 85624-8671 6 bp Feature: gene Location: 86820-87155 bp Feature: domain Description: NERD Location: 86919-87090 bp Feature: domain Description: NERD Location: 8691 9-87090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)