myRT

myRT report for GCA_000796345.1_AZPAE14453

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Seq: JTYF01000004.1 (136293 bp)
Overview 1 RT 1: 93079-98660 bp Neighborhood of RT #1 [93079, 98665] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 93079-93273 bp Feature: gene Location: 93412-93666 bp Feature: domain Description: SdhE Location: 93418-93658 bp Feature: domain Description: SdhE Location: 9341 8-93658 bp Feature: gene Location: 93742-95061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93745-94321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93745-94321 bp Feature: domain Description: YkfC Location: 94519-94675 bp Feature: domain Description: YkfC Location: 9451 9-94675 bp Feature: domain Description: HNH Note: nucleases Location: 94858-94996 bp Feature: domain Description: HNH Note: nucleases Location: 94858-94996 bp Feature: gene Location: 96784-97728 bp Feature: domain Description: YgfZ Location: 96793-97693 bp Feature: domain Description: YgfZ Location: 96793-97693 bp Feature: gene Location: 97829-98665 bp Feature: domain Description: HDOD Location: 97832-98660 bp Feature: domain Description: HDOD Location: 97832-98660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: JTYF01000059.1 (35909 bp)
Overview 1 RT 1: 25775-33947 bp Neighborhood of RT #1 [25775, 34141] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25775-27646 bp Feature: domain Description: DUF262 Location: 25823-26591 bp Feature: domain Description: DUF2 62 Location: 2 582 3-2 6591 bp Feature: gene Location: 27650-29431 bp Feature: domain Description: YeeA Location: 28517-29297 bp Feature: domain Description: YeeA Location: 2 8517-2 92 97 bp Feature: gene Location: 29428-32448 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923-30394 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 992 3-30394 bp Feature: gene Location: 32445-33002 bp Feature: gene Location: 33002-34141 bp Feature: domain Description: AAA_21 Location: 33074-33143 bp Feature: domain Description: AAA_2 1 Location: 33074-33143 bp Feature: domain Description: AAA_21 Location: 33617-33947 bp Feature: domain Description: AAA_2 1 Location: 33617-33947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: JTYF01000012.1 (377195 bp)
Overview 1 RT 1: 292069-302801 bp 2 RT 2: 319059-327879 bp Neighborhood of RT #1 [292069, 302803] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [319059, 327908] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 292069-292284 bp Feature: domain Description: NERD Location: 292096-292219 bp Feature: domain Description: NERD Location: 292096-292219 bp Feature: gene Location: 292497-293618 bp Feature: domain Description: COG3177 Location: 292515-293607 bp Feature: domain Description: COG3 177 Location: 292515-293 607 bp Feature: gene Location: 294340-296025 bp Feature: domain Description: RVT_N Location: 294397-294637 bp Feature: domain Description: RVT_N Location: 2943 97-29463 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294685-295321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294685-2953 21 bp Feature: domain Description: GIIM Note: maturase Location: 295375-295606 bp Feature: domain Description: GIIM Note: maturase Location: 2953 75-295606 bp Feature: domain Description: HNH Note: nucleases Location: 295858-295996 bp Feature: domain Description: HNH Note: nucleases Location: 295858-295996 bp Feature: gene Location: 297106-300843 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 297214-297871 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 297214-297871 bp Feature: domain Description: PRK09776 Location: 298084-298555 bp Feature: domain Description: PRK09776 Location: 298084-298555 bp Feature: domain Description: PAS Location: 298612-299137 bp Feature: domain Description: PAS Location: 298612-29913 7 bp Feature: domain Description: PRK10060 Location: 299149-300793 bp Feature: domain Description: PRK10060 Location: 299149-3 00793 bp Feature: gene Location: 300950-302803 bp Feature: domain Description: PRK05658 Location: 300962-302801 bp Feature: domain Description: PRK05658 Location: 3 00962-3 02801 bp Feature: gene Location: 319059-320273 bp Feature: domain Description: PRK10770 Location: 319071-320265 bp Feature: domain Description: PRK10770 Location: 3 19071-3 20265 bp Feature: gene Location: 320332-323103 bp Feature: domain Description: LptD Location: 320527-323089 bp Feature: domain Description: LptD Location: 3 20527-3 23 089 bp Feature: gene Location: 323236-324948 bp Feature: domain Description: RVT_N Location: 323293-323536 bp Feature: domain Description: RVT_N Location: 3 23 293 -3 23 53 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323581-324217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 23 581-3 24217 bp Feature: domain Description: YkfC Location: 324427-324577 bp Feature: domain Description: YkfC Location: 3 24427-3 24577 bp Feature: domain Description: HNH Note: nucleases Location: 324754-324892 bp Feature: domain Description: HNH Note: nucleases Location: 3 24754-3 24892 bp Feature: gene Location: 326221-327237 bp Feature: domain Description: COG3178 Location: 326224-327223 bp Feature: domain Description: COG3 178 Location: 3 26224-3 27223 bp Feature: gene Location: 327234-327908 bp Feature: domain Description: NTP_transferase_like_1 Location: 327240-327879 bp Feature: domain Description: NTP_transferase_like_1 Location: 3 27240-3 27879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)