myRT

myRT report for GCA_000796365.1_AZPAE14463

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Seq: JTYE01000034.1 (129708 bp)
Overview 1 RT 1: 123852-129393 bp Neighborhood of RT #1 [123852, 129689] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 123852-125396 bp Feature: domain Description: CHD Location: 124068-124482 bp Feature: domain Description: CHD Location: 1 24068-1 24482 bp Feature: domain Description: CHD Location: 124710-125199 bp Feature: domain Description: CHD Location: 1 2471 0-1 251 99 bp Feature: gene Location: 126480-126659 bp Feature: gene Location: 127391-128659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127604-128261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 27604-1 28261 bp Feature: domain Description: GIIM Note: maturase Location: 128339-128561 bp Feature: domain Description: GIIM Note: maturase Location: 1 28339-1 28561 bp Feature: gene Location: 129048-129689 bp Feature: domain Description: DUF772 Location: 129198-129393 bp Feature: domain Description: DUF772 Location: 1 291 98-1 29393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: JTYE01000012.1 (377092 bp)
Overview 1 RT 1: 291967-302700 bp 2 RT 2: 318958-327778 bp Neighborhood of RT #1 [291967, 302702] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [318958, 327807] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 291967-292182 bp Feature: domain Description: NERD Location: 291994-292117 bp Feature: domain Description: NERD Location: 2 91994-2 92 117 bp Feature: gene Location: 292395-293516 bp Feature: domain Description: COG3177 Location: 292413-293505 bp Feature: domain Description: COG3177 Location: 2 92 413-2 93505 bp Feature: gene Location: 294239-295924 bp Feature: domain Description: RVT_N Location: 294296-294536 bp Feature: domain Description: RVT_N Location: 2 942 96-2 94536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294584-295220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 94584-2 952 2 0 bp Feature: domain Description: GIIM Note: maturase Location: 295274-295505 bp Feature: domain Description: GIIM Note: maturase Location: 2 952 74-2 95505 bp Feature: domain Description: HNH Note: nucleases Location: 295757-295895 bp Feature: domain Description: HNH Note: nucleases Location: 2 95757-2 95895 bp Feature: gene Location: 297005-300742 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 297113-297770 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 97113-2 97770 bp Feature: domain Description: PRK09776 Location: 297983-298454 bp Feature: domain Description: PRK09776 Location: 2 97983-2 98454 bp Feature: domain Description: PAS Location: 298511-299036 bp Feature: domain Description: PAS Location: 2 98511-2 99036 bp Feature: domain Description: PRK10060 Location: 299048-300692 bp Feature: domain Description: PRK10060 Location: 2 99048-300692 bp Feature: gene Location: 300849-302702 bp Feature: domain Description: PRK05658 Location: 300861-302700 bp Feature: domain Description: PRK05658 Location: 300861-302 700 bp Feature: gene Location: 318958-320172 bp Feature: domain Description: PRK10770 Location: 318970-320164 bp Feature: domain Description: PRK10770 Location: 318970-32 0164 bp Feature: gene Location: 320231-323002 bp Feature: domain Description: LptD Location: 320426-322988 bp Feature: domain Description: LptD Location: 32 042 6-32 2 988 bp Feature: gene Location: 323135-324847 bp Feature: domain Description: RVT_N Location: 323192-323435 bp Feature: domain Description: RVT_N Location: 32 3192 -32 3435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323480-324116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 3480-32 4116 bp Feature: domain Description: YkfC Location: 324326-324476 bp Feature: domain Description: YkfC Location: 32 432 6-32 4476 bp Feature: domain Description: HNH Note: nucleases Location: 324653-324791 bp Feature: domain Description: HNH Note: nucleases Location: 32 4653-32 4791 bp Feature: gene Location: 326120-327136 bp Feature: domain Description: COG3178 Location: 326123-327122 bp Feature: domain Description: COG3178 Location: 32 612 3-32 712 2 bp Feature: gene Location: 327133-327807 bp Feature: domain Description: NTP_transferase_like_1 Location: 327139-327778 bp Feature: domain Description: NTP_transferase_like_1 Location: 32 7139-32 7778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTYE01000004.1 (171337 bp)
Overview 1 RT 1: 80099-85680 bp Neighborhood of RT #1 [80099, 85685] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 80099-80293 bp Feature: gene Location: 80432-80686 bp Feature: domain Description: SdhE Location: 80438-80678 bp Feature: domain Description: SdhE Location: 8043 8-80678 bp Feature: gene Location: 80762-82081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80765-81341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80765-813 41 bp Feature: domain Description: YkfC Location: 81539-81695 bp Feature: domain Description: YkfC Location: 8153 9-81695 bp Feature: domain Description: HNH Note: nucleases Location: 81878-82016 bp Feature: domain Description: HNH Note: nucleases Location: 81878-82016 bp Feature: gene Location: 83804-84748 bp Feature: domain Description: YgfZ Location: 83813-84713 bp Feature: domain Description: YgfZ Location: 83 813 -84713 bp Feature: gene Location: 84849-85685 bp Feature: domain Description: HDOD Location: 84852-85680 bp Feature: domain Description: HDOD Location: 84852-85680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: JTYE01000083.1 (35910 bp)
Overview 1 RT 1: 25776-33948 bp Neighborhood of RT #1 [25776, 34142] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25776-27647 bp Feature: domain Description: DUF262 Location: 25824-26592 bp Feature: domain Description: DUF262 Location: 25824 -26592 bp Feature: gene Location: 27651-29432 bp Feature: domain Description: YeeA Location: 28518-29298 bp Feature: domain Description: YeeA Location: 28518-29298 bp Feature: gene Location: 29429-32449 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29924-30395 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29924 -30395 bp Feature: gene Location: 32446-33003 bp Feature: gene Location: 33003-34142 bp Feature: domain Description: AAA_21 Location: 33075-33144 bp Feature: domain Description: AAA_21 Location: 33075-3314 4 bp Feature: domain Description: AAA_21 Location: 33618-33948 bp Feature: domain Description: AAA_21 Location: 33618-3394 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)