myRT

myRT report for GCA_000796525.1_AZPAE12138

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Seq: JUAW01000006.1 (133934 bp)
Overview 1 RT 1: 93-6337 bp Neighborhood of RT #1 [93, 6624] RVT-UG5 nitrilase COG4127 restrict_AAA_1 restrict_AAA_1 Feature: gene Location: 93-2573 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 96-525 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 96-525 bp Feature: domain Description: nitrilase Location: 1884-2469 bp Feature: domain Description: nitrilase Location: 1 884-2469 bp Feature: gene Location: 2943-3608 bp Feature: domain Description: COG4127 Location: 2946-3597 bp Feature: domain Description: COG41 27 Location: 2946-3597 bp Feature: gene Location: 4873-6624 bp Feature: domain Description: restrict_AAA_1 Location: 4876-5623 bp Feature: domain Description: restrict_AAA_1 Location: 4876-5623 bp Feature: domain Description: restrict_AAA_1 Location: 5950-6337 bp Feature: domain Description: restrict_AAA_1 Location: 5950-6337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), restrict_AAA_1 (TIGR04435)

Seq: JUAW01000012.1 (2418 bp)
Overview 1 RT 1: 83-2415 bp Neighborhood of RT #1 [83, 2415] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1801 bp Feature: domain Description: RVT_N Location: 140-377 bp Feature: domain Description: RVT_N Location: 140-377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 8-1079 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1364 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1364 bp Feature: domain Description: HNHc Note: nucleases Location: 1598-1754 bp Feature: domain Description: HNHc Note: nucleases Location: 1598-1754 bp Feature: gene Location: 2071-2199 bp Feature: gene Location: 2230-2415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JUAW01000003.1 (232792 bp)
Overview 1 RT 1: 133308-144554 bp 2 RT 2: 160815-169639 bp Neighborhood of RT #1 [133308, 144556] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [160815, 169668] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 133308-134078 bp Feature: domain Description: NERD Location: 133407-133740 bp Feature: domain Description: NERD Location: 13 3 407-13 3 740 bp Feature: domain Description: zf-C4_Topoisom Location: 133959-134073 bp Feature: domain Description: zf-C4_Topoisom Location: 13 3 959-13 4073 bp Feature: gene Location: 134249-135370 bp Feature: domain Description: COG3177 Location: 134267-135359 bp Feature: domain Description: COG3 177 Location: 13 4267-13 53 59 bp Feature: gene Location: 136093-137778 bp Feature: domain Description: RVT_N Location: 136150-136390 bp Feature: domain Description: RVT_N Location: 13 6150-13 63 90 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136438-137074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 643 8-13 7074 bp Feature: domain Description: GIIM Note: maturase Location: 137128-137359 bp Feature: domain Description: GIIM Note: maturase Location: 13 7128-13 73 59 bp Feature: domain Description: HNH Note: nucleases Location: 137611-137749 bp Feature: domain Description: HNH Note: nucleases Location: 13 7611-13 7749 bp Feature: gene Location: 138859-142596 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 138967-139624 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 13 8967-13 9624 bp Feature: domain Description: PRK09776 Location: 139837-140308 bp Feature: domain Description: PRK09776 Location: 13 983 7-1403 08 bp Feature: domain Description: PAS Location: 140365-140890 bp Feature: domain Description: PAS Location: 1403 65-140890 bp Feature: domain Description: PRK10060 Location: 140902-142546 bp Feature: domain Description: PRK10060 Location: 140902-142546 bp Feature: gene Location: 142703-144556 bp Feature: domain Description: PRK05658 Location: 142715-144554 bp Feature: domain Description: PRK05658 Location: 142715-144554 bp Feature: gene Location: 160815-162029 bp Feature: domain Description: PRK10770 Location: 160827-162021 bp Feature: domain Description: PRK10770 Location: 160827-162021 bp Feature: gene Location: 162088-164862 bp Feature: domain Description: LptD Location: 162283-164848 bp Feature: domain Description: LptD Location: 162283 -164848 bp Feature: gene Location: 164995-166707 bp Feature: domain Description: RVT_N Location: 165052-165295 bp Feature: domain Description: RVT_N Location: 165052-165295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165340-165976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1653 40-165976 bp Feature: domain Description: YkfC Location: 166183-166336 bp Feature: domain Description: YkfC Location: 166183 -1663 3 6 bp Feature: domain Description: HNH Note: nucleases Location: 166513-166651 bp Feature: domain Description: HNH Note: nucleases Location: 166513 -166651 bp Feature: gene Location: 167981-168997 bp Feature: domain Description: COG3178 Location: 167984-168983 bp Feature: domain Description: COG3 178 Location: 167984-168983 bp Feature: gene Location: 168994-169668 bp Feature: domain Description: NTP_transferase_like_1 Location: 169000-169639 bp Feature: domain Description: NTP_transferase_like_1 Location: 169000-16963 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)