myRT

myRT report for GCA_000796725.1_AZPAE14715

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Seq: JTWR01000044.1 (190408 bp)
Overview 1 RT 1: 105625-115931 bp 2 RT 2: 132189-141027 bp Neighborhood of RT #1 [105625, 115933] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [132189, 141056] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 105625-106746 bp Feature: domain Description: COG3177 Location: 105643-106735 bp Feature: domain Description: COG31 77 Location: 1 05643-1 06735 bp Feature: gene Location: 107005-107142 bp Feature: gene Location: 107470-109155 bp Feature: RT Description: RVT_N Location: 107527-107767 bp Feature: RT Description: RVT_N Location: 1 07527-1 07767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107815-108451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0781 5-1 08451 bp Feature: domain Description: GIIM Note: maturase Location: 108505-108736 bp Feature: domain Description: GIIM Note: maturase Location: 1 08505-1 08736 bp Feature: domain Description: HNH Note: nucleases Location: 108988-109126 bp Feature: domain Description: HNH Note: nucleases Location: 1 08988-1 091 26 bp Feature: gene Location: 110236-113973 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 110344-111001 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 1 0344-1 1 1 001 bp Feature: domain Description: PRK09776 Location: 111214-111685 bp Feature: domain Description: PRK09776 Location: 1 1 1 21 4-1 1 1 685 bp Feature: domain Description: PAS Location: 111742-112267 bp Feature: domain Description: PAS Location: 1 1 1 742-1 1 2267 bp Feature: domain Description: PRK10060 Location: 112276-113923 bp Feature: domain Description: PRK1 0060 Location: 1 1 2276-1 1 3923 bp Feature: gene Location: 114080-115933 bp Feature: domain Description: PRK05658 Location: 114092-115931 bp Feature: domain Description: PRK05658 Location: 1 1 4092-1 1 5931 bp Feature: gene Location: 132189-133403 bp Feature: domain Description: PRK10770 Location: 132201-133395 bp Feature: domain Description: PRK1 0770 Location: 1 32201 -1 33395 bp Feature: gene Location: 133462-136251 bp Feature: domain Description: LptD Location: 133657-136237 bp Feature: domain Description: LptD Location: 1 33657-1 36237 bp Feature: gene Location: 136384-138096 bp Feature: RT Description: RVT_N Location: 136441-136684 bp Feature: RT Description: RVT_N Location: 1 36441 -1 36684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136729-137365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36729-1 37365 bp Feature: domain Description: YkfC Location: 137572-137725 bp Feature: domain Description: YkfC Location: 1 37572-1 37725 bp Feature: domain Description: HNH Note: nucleases Location: 137902-138040 bp Feature: domain Description: HNH Note: nucleases Location: 1 37902-1 38040 bp Feature: gene Location: 139369-140385 bp Feature: domain Description: COG3178 Location: 139372-140371 bp Feature: domain Description: COG31 78 Location: 1 39372-1 40371 bp Feature: gene Location: 140382-141056 bp Feature: domain Description: NTP_transferase_like_1 Location: 140388-141027 bp Feature: domain Description: NTP_transferase_like_1 Location: 1 40388-1 41 027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)