myRT

myRT report for GCA_000797085.1_AZPAE14713

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Seq: JTWT01000006.1 (230667 bp)
Overview 1 RT 1: 145543-156276 bp 2 RT 2: 172534-181354 bp Neighborhood of RT #1 [145543, 156278] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [172534, 181383] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 145543-145758 bp Feature: domain Description: NERD Location: 145570-145693 bp Feature: domain Description: NERD Location: 1 45570-1 45693 bp Feature: gene Location: 145971-147092 bp Feature: domain Description: COG3177 Location: 145989-147081 bp Feature: domain Description: COG31 77 Location: 1 45989-1 47081 bp Feature: gene Location: 147815-149500 bp Feature: domain Description: RVT_N Location: 147872-148112 bp Feature: domain Description: RVT_N Location: 1 47872-1 481 1 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148160-148796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 481 60-1 48796 bp Feature: domain Description: GIIM Note: maturase Location: 148850-149081 bp Feature: domain Description: GIIM Note: maturase Location: 1 48850-1 49081 bp Feature: domain Description: HNH Note: nucleases Location: 149333-149471 bp Feature: domain Description: HNH Note: nucleases Location: 1 49333-1 49471 bp Feature: gene Location: 150581-154318 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 150689-151346 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 50689-1 51 346 bp Feature: domain Description: PRK09776 Location: 151559-152030 bp Feature: domain Description: PRK09776 Location: 1 51 559-1 52030 bp Feature: domain Description: PAS Location: 152087-152612 bp Feature: domain Description: PAS Location: 1 52087-1 5261 2 bp Feature: domain Description: PRK10060 Location: 152624-154268 bp Feature: domain Description: PRK1 0060 Location: 1 52624-1 54268 bp Feature: gene Location: 154425-156278 bp Feature: domain Description: PRK05658 Location: 154437-156276 bp Feature: domain Description: PRK05658 Location: 1 54437-1 56276 bp Feature: gene Location: 172534-173748 bp Feature: domain Description: PRK10770 Location: 172546-173740 bp Feature: domain Description: PRK1 0770 Location: 1 72546-1 73740 bp Feature: gene Location: 173807-176578 bp Feature: domain Description: LptD Location: 174002-176564 bp Feature: domain Description: LptD Location: 1 74002-1 76564 bp Feature: gene Location: 176711-178423 bp Feature: domain Description: RVT_N Location: 176768-177011 bp Feature: domain Description: RVT_N Location: 1 76768-1 7701 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177056-177692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 77056-1 77692 bp Feature: domain Description: YkfC Location: 177902-178052 bp Feature: domain Description: YkfC Location: 1 77902-1 78052 bp Feature: domain Description: HNH Note: nucleases Location: 178229-178367 bp Feature: domain Description: HNH Note: nucleases Location: 1 78229-1 78367 bp Feature: gene Location: 179696-180712 bp Feature: domain Description: COG3178 Location: 179699-180698 bp Feature: domain Description: COG31 78 Location: 1 79699-1 80698 bp Feature: gene Location: 180709-181383 bp Feature: domain Description: NTP_transferase_like_1 Location: 180715-181354 bp Feature: domain Description: NTP_transferase_like_1 Location: 1 8071 5-1 81 354 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTWT01000014.1 (161491 bp)
Overview 1 RT 1: 85652-91238 bp Neighborhood of RT #1 [85652, 91238] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 85652-86488 bp Feature: domain Description: HDOD Location: 85655-86483 bp Feature: domain Description: HDOD Location: 85655-86483 bp Feature: gene Location: 86589-87533 bp Feature: domain Description: YgfZ Location: 86598-87498 bp Feature: domain Description: YgfZ Location: 86598-87498 bp Feature: gene Location: 89256-90575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89259-89835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892 59-89835 bp Feature: domain Description: YkfC Location: 90033-90189 bp Feature: domain Description: YkfC Location: 90033-90189 bp Feature: domain Description: HNH Note: nucleases Location: 90372-90510 bp Feature: domain Description: HNH Note: nucleases Location: 90372 -90510 bp Feature: gene Location: 90651-90905 bp Feature: domain Description: SdhE Location: 90657-90897 bp Feature: domain Description: SdhE Location: 90657-90897 bp Feature: gene Location: 91044-91238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: JTWT01000045.1 (37458 bp)
Overview 1 RT 1: 31908-37457 bp Neighborhood of RT #1 [31908, 37457] CHD CHD RVT-GII GIIM Feature: gene Location: 31908-33452 bp Feature: domain Description: CHD Location: 32124-32538 bp Feature: domain Description: CHD Location: 3 2124-3 253 8 bp Feature: domain Description: CHD Location: 32766-33255 bp Feature: domain Description: CHD Location: 3 2766-3 3 255 bp Feature: gene Location: 34536-34715 bp Feature: gene Location: 35447-36715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35660-36317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5660-3 63 17 bp Feature: domain Description: GIIM Note: maturase Location: 36395-36617 bp Feature: domain Description: GIIM Note: maturase Location: 3 63 95-3 6617 bp Feature: gene Location: 37251-37457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: JTWT01000063.1 (35908 bp)
Overview 1 RT 1: 25775-33947 bp Neighborhood of RT #1 [25775, 34141] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25775-27646 bp Feature: domain Description: DUF262 Location: 25823-26591 bp Feature: domain Description: DUF262 Location: 25823-26591 bp Feature: gene Location: 27650-29431 bp Feature: domain Description: YeeA Location: 28517-29297 bp Feature: domain Description: YeeA Location: 28517-29297 bp Feature: gene Location: 29428-32448 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923-30394 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923-30394 bp Feature: gene Location: 32445-33002 bp Feature: gene Location: 33002-34141 bp Feature: domain Description: AAA_21 Location: 33074-33143 bp Feature: domain Description: AAA_21 Location: 33074 -3314 3 bp Feature: domain Description: AAA_21 Location: 33617-33947 bp Feature: domain Description: AAA_21 Location: 33617-3394 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)