myRT

myRT report for GCA_000797185.1_AZPAE12416

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Seq: JTZY01000030.1 (120584 bp)
Overview 1 RT 1: 57798-68104 bp 2 RT 2: 84362-93181 bp Neighborhood of RT #1 [57798, 68106] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [84362, 93210] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 57798-58919 bp Feature: domain Description: COG3177 Location: 57816-58908 bp Feature: domain Description: COG31 77 Location: 5781 6-58908 bp Feature: gene Location: 59178-59315 bp Feature: gene Location: 59643-61328 bp Feature: RT Description: RVT_N Location: 59700-59940 bp Feature: RT Description: RVT_N Location: 59700-59940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59988-60624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59988-60624 bp Feature: domain Description: GIIM Note: maturase Location: 60678-60909 bp Feature: domain Description: GIIM Note: maturase Location: 60678-60909 bp Feature: domain Description: HNH Note: nucleases Location: 61161-61299 bp Feature: domain Description: HNH Note: nucleases Location: 61 1 61 -61 299 bp Feature: gene Location: 62409-66146 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 62517-63174 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 6251 7-631 74 bp Feature: domain Description: PRK09776 Location: 63387-63858 bp Feature: domain Description: PRK09776 Location: 63387-63858 bp Feature: domain Description: PAS Location: 63912-64440 bp Feature: domain Description: PAS Location: 6391 2-64440 bp Feature: domain Description: PRK10060 Location: 64449-66096 bp Feature: domain Description: PRK1 0060 Location: 64449-66096 bp Feature: gene Location: 66253-68106 bp Feature: domain Description: PRK05658 Location: 66265-68104 bp Feature: domain Description: PRK05658 Location: 66265-681 04 bp Feature: gene Location: 84362-85576 bp Feature: domain Description: PRK10770 Location: 84374-85568 bp Feature: domain Description: PRK1 0770 Location: 84374-85568 bp Feature: gene Location: 85635-88406 bp Feature: domain Description: LptD Location: 85830-88392 bp Feature: domain Description: LptD Location: 85830-88392 bp Feature: gene Location: 88539-90251 bp Feature: RT Description: RVT_N Location: 88596-88839 bp Feature: RT Description: RVT_N Location: 88596-88839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88884-89520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88884-89520 bp Feature: domain Description: YkfC Location: 89730-89880 bp Feature: domain Description: YkfC Location: 89730-89880 bp Feature: domain Description: HNH Note: nucleases Location: 90057-90195 bp Feature: domain Description: HNH Note: nucleases Location: 90057-901 95 bp Feature: gene Location: 91523-92539 bp Feature: domain Description: COG3178 Location: 91526-92525 bp Feature: domain Description: COG31 78 Location: 91 526-92525 bp Feature: gene Location: 92536-93210 bp Feature: domain Description: NTP_transferase_like_1 Location: 92542-93181 bp Feature: domain Description: NTP_transferase_like_1 Location: 92542-931 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)