myRT

myRT report for GCA_000797395.1_AZPAE13756

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Seq: JTZQ01000008.1 (377195 bp)
Overview 1 RT 1: 292070-302803 bp 2 RT 2: 319061-327881 bp Neighborhood of RT #1 [292070, 302805] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [319061, 327910] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 292070-292285 bp Feature: domain Description: NERD Location: 292097-292220 bp Feature: domain Description: NERD Location: 292097-292220 bp Feature: gene Location: 292498-293619 bp Feature: domain Description: COG3177 Location: 292516-293608 bp Feature: domain Description: COG31 77 Location: 29251 6-293608 bp Feature: gene Location: 294342-296027 bp Feature: domain Description: RVT_N Location: 294399-294639 bp Feature: domain Description: RVT_N Location: 294399-294639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294687-295323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294687-295323 bp Feature: domain Description: GIIM Note: maturase Location: 295377-295608 bp Feature: domain Description: GIIM Note: maturase Location: 295377-295608 bp Feature: domain Description: HNH Note: nucleases Location: 295860-295998 bp Feature: domain Description: HNH Note: nucleases Location: 295860-295998 bp Feature: gene Location: 297108-300845 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 297216-297873 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 29721 6-297873 bp Feature: domain Description: PRK09776 Location: 298086-298557 bp Feature: domain Description: PRK09776 Location: 298086-298557 bp Feature: domain Description: PAS Location: 298614-299139 bp Feature: domain Description: PAS Location: 29861 4-2991 39 bp Feature: domain Description: PRK10060 Location: 299151-300795 bp Feature: domain Description: PRK1 0060 Location: 2991 51 -300795 bp Feature: gene Location: 300952-302805 bp Feature: domain Description: PRK05658 Location: 300964-302803 bp Feature: domain Description: PRK05658 Location: 300964-302803 bp Feature: gene Location: 319061-320275 bp Feature: domain Description: PRK10770 Location: 319073-320267 bp Feature: domain Description: PRK1 0770 Location: 31 9073-320267 bp Feature: gene Location: 320334-323105 bp Feature: domain Description: LptD Location: 320529-323091 bp Feature: domain Description: LptD Location: 320529-323091 bp Feature: gene Location: 323238-324950 bp Feature: domain Description: RVT_N Location: 323295-323538 bp Feature: domain Description: RVT_N Location: 323295-323538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323583-324219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323583-32421 9 bp Feature: domain Description: YkfC Location: 324429-324579 bp Feature: domain Description: YkfC Location: 324429-324579 bp Feature: domain Description: HNH Note: nucleases Location: 324756-324894 bp Feature: domain Description: HNH Note: nucleases Location: 324756-324894 bp Feature: gene Location: 326223-327239 bp Feature: domain Description: COG3178 Location: 326226-327225 bp Feature: domain Description: COG31 78 Location: 326226-327225 bp Feature: gene Location: 327236-327910 bp Feature: domain Description: NTP_transferase_like_1 Location: 327242-327881 bp Feature: domain Description: NTP_transferase_like_1 Location: 327242-327881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JTZQ01000030.1 (184316 bp)
Overview 1 RT 1: 85653-91239 bp Neighborhood of RT #1 [85653, 91239] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 85653-86489 bp Feature: domain Description: HDOD Location: 85656-86484 bp Feature: domain Description: HDOD Location: 85656-86484 bp Feature: gene Location: 86590-87534 bp Feature: domain Description: YgfZ Location: 86599-87499 bp Feature: domain Description: YgfZ Location: 86599-87499 bp Feature: gene Location: 89257-90576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89260-89836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892 60-89836 bp Feature: domain Description: YkfC Location: 90034-90190 bp Feature: domain Description: YkfC Location: 90034-90190 bp Feature: domain Description: HNH Note: nucleases Location: 90373-90511 bp Feature: domain Description: HNH Note: nucleases Location: 90373-90511 bp Feature: gene Location: 90652-90906 bp Feature: domain Description: SdhE Location: 90658-90898 bp Feature: domain Description: SdhE Location: 90658-90898 bp Feature: gene Location: 91045-91239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: JTZQ01000002.1 (265623 bp)
Overview 1 RT 1: 254225-261149 bp Neighborhood of RT #1 [254225, 261232] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 254225-255769 bp Feature: domain Description: CHD Location: 254441-254855 bp Feature: domain Description: CHD Location: 254441-254855 bp Feature: domain Description: CHD Location: 255083-255572 bp Feature: domain Description: CHD Location: 255083 -255572 bp Feature: gene Location: 256853-257032 bp Feature: gene Location: 257764-259032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257977-258634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257977-25863 4 bp Feature: domain Description: GIIM Note: maturase Location: 258712-258934 bp Feature: domain Description: GIIM Note: maturase Location: 258712-25893 4 bp Feature: gene Location: 259421-260062 bp Feature: domain Description: DUF772 Location: 259571-259766 bp Feature: domain Description: DUF772 Location: 259571-259766 bp Feature: gene Location: 260405-261232 bp Feature: domain Description: ABC_phnC Location: 260435-261149 bp Feature: domain Description: ABC_phnC Location: 26043 5-261149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: JTZQ01000051.1 (35910 bp)
Overview 1 RT 1: 25776-33948 bp Neighborhood of RT #1 [25776, 34142] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25776-27647 bp Feature: domain Description: DUF262 Location: 25824-26592 bp Feature: domain Description: DUF262 Location: 25824 -26592 bp Feature: gene Location: 27651-29432 bp Feature: domain Description: YeeA Location: 28518-29298 bp Feature: domain Description: YeeA Location: 28518-29298 bp Feature: gene Location: 29429-32449 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29924-30395 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29924 -30395 bp Feature: gene Location: 32446-33003 bp Feature: gene Location: 33003-34142 bp Feature: domain Description: AAA_21 Location: 33075-33144 bp Feature: domain Description: AAA_21 Location: 33075-3314 4 bp Feature: domain Description: AAA_21 Location: 33618-33948 bp Feature: domain Description: AAA_21 Location: 33618-3394 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)