myRT

myRT report for GCA_000797515.1_ASM79751v1

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Seq: JSBN01000117.1 Sphingomonas sp. Ant H11 contig_117, whole genome shotgun sequence (39435 bp)
Overview 1 RT 1: 8555-11575 bp 2 RT 2: 15102-18863 bp Neighborhood of RT #1 [8555, 11575] REC KOG4768 RVT-GII Neighborhood of RT #2 [15102, 18863] HNHc RVT-GII Feature: gene Location: 8555-8962 bp Feature: domain Description: REC Location: 8585-8912 bp Feature: domain Description: REC Location: 8585-891 2 bp Feature: gene Location: 9147-9713 bp Feature: domain Description: KOG4768 Location: 9159-9684 bp Feature: domain Description: KOG4768 Location: 91 59-9684 bp Feature: gene Location: 9740-10867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9860-10691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9860-1 0691 bp Feature: gene Location: 10933-11214 bp Feature: gene Location: 11300-11575 bp Feature: gene Location: 15102-15683 bp Feature: gene Location: 15843-16325 bp Feature: domain Description: HNHc Note: nucleases Location: 16128-16272 bp Feature: domain Description: HNHc Note: nucleases Location: 1 61 28-1 6272 bp Feature: gene Location: 16372-17709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16639-17431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6639-1 7431 bp Feature: gene Location: 17996-18271 bp Feature: gene Location: 18534-18863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII, HNHc (smart00507)

Seq: JSBN01000016.1 Sphingomonas sp. Ant H11 contig_16, whole genome shotgun sequence (74781 bp)
Overview 1 RT 1: 52502-57339 bp Neighborhood of RT #1 [52502, 57452] RVT-Retrons INT_P4_C Feature: gene Location: 52502-53119 bp Feature: gene Location: 53234-54262 bp Feature: gene Location: 54403-55533 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54628-55267 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5462 8-552 67 bp Feature: gene Location: 55718-57184 bp Feature: gene Location: 56979-57452 bp Feature: domain Description: INT_P4_C Location: 56982-57339 bp Feature: domain Description: INT_P4_C Location: 56982 -57339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, INT_P4_C (cd00801)

Seq: JSBN01000160.1 Sphingomonas sp. Ant H11 contig_160, whole genome shotgun sequence (14322 bp)
Overview 1 RT 1: 1-2927 bp Neighborhood of RT #1 [1, 3073] RVT-GII GIIM PHA02517 STKc_PknB_like Feature: gene Location: 1-303 bp Feature: gene Location: 218-388 bp Feature: gene Location: 381-1745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 489-1224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 489-1224 bp Feature: domain Description: GIIM Note: maturase Location: 1296-1524 bp Feature: domain Description: GIIM Note: maturase Location: 1296-1524 bp Feature: gene Location: 1855-2274 bp Feature: domain Description: PHA02517 Location: 1858-2263 bp Feature: domain Description: PHA02517 Location: 1858-2263 bp Feature: gene Location: 2285-3073 bp Feature: domain Description: STKc_PknB_like Location: 2435-2927 bp Feature: domain Description: STKc_PknB_like Location: 243 5-2927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), STKc_PknB_like (cd14014)

Seq: JSBN01000210.1 Sphingomonas sp. Ant H11 contig_210, whole genome shotgun sequence (22868 bp)
Overview 1 RT 1: 20281-22867 bp Neighborhood of RT #1 [20281, 22867] RVT-GII RVT-GII Intron_maturas2 Feature: gene Location: 20281-20511 bp Feature: gene Location: 20629-20787 bp Feature: gene Location: 20431-21276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20698-21139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20698-21139 bp Feature: gene Location: 21273-21917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21339-21528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21339-21528 bp Feature: domain Description: Intron_maturas2 Location: 21666-21903 bp Feature: domain Description: Intron_maturas2 Location: 21666-21903 bp Feature: gene Location: 21947-22294 bp Feature: gene Location: 22493-22867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: JSBN01000026.1 Sphingomonas sp. Ant H11 contig_26, whole genome shotgun sequence (147691 bp)
Overview 1 RT 1: 11586-15736 bp Neighborhood of RT #1 [11586, 15736] HEPN_AbiU2 RVT-GII Intron_maturas2 RVT-GII Feature: gene Location: 11586-12233 bp Feature: domain Description: HEPN_AbiU2 Location: 11685-12171 bp Feature: domain Description: HEPN_AbiU2 Location: 11685 -12171 bp Feature: gene Location: 12412-12801 bp Feature: gene Location: 12789-13433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12855-13044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1285 5 -13044 bp Feature: domain Description: Intron_maturas2 Location: 13182-13413 bp Feature: domain Description: Intron_maturas2 Location: 13182-13413 bp Feature: gene Location: 13430-14278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13697-14132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13697-14132 bp Feature: gene Location: 15131-15487 bp Feature: gene Location: 15566-15736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEPN_AbiU2 (pfam18734), RVT-GII, Intron_maturas2 (pfam01348)

Seq: JSBN01000031.1 Sphingomonas sp. Ant H11 contig_31, whole genome shotgun sequence (128538 bp)
Overview 1 RT 1: 42010-45943 bp Neighborhood of RT #1 [42010, 45948] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 42010-42471 bp Feature: gene Location: 42565-42870 bp Feature: gene Location: 43105-44634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43378-44113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43378-44113 bp Feature: domain Description: GIIM Note: maturase Location: 44185-44413 bp Feature: domain Description: GIIM Note: maturase Location: 44185-44413 bp Feature: gene Location: 45170-45661 bp Feature: domain Description: PHA02517 Location: 45236-45575 bp Feature: domain Description: PHA02517 Location: 45236 -45575 bp Feature: gene Location: 45658-45948 bp Feature: domain Description: InsE Location: 45667-45943 bp Feature: domain Description: InsE Location: 456 6 7-45943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: JSBN01000040.1 Sphingomonas sp. Ant H11 contig_40, whole genome shotgun sequence (95626 bp)
Overview 1 RT 1: 80857-84963 bp Neighborhood of RT #1 [80857, 84963] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 80857-81699 bp Feature: gene Location: 82333-82590 bp Feature: gene Location: 82583-84133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82586-83387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82586-83387 bp Feature: domain Description: Intron_maturas2 Location: 83468-83756 bp Feature: domain Description: Intron_maturas2 Location: 83468-837 56 bp Feature: domain Description: HNHc Note: nucleases Location: 83924-84077 bp Feature: domain Description: HNHc Note: nucleases Location: 83924-8407 7 bp Feature: gene Location: 84087-84491 bp Feature: gene Location: 84751-84963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JSBN01000057.1 Sphingomonas sp. Ant H11 contig_57, whole genome shotgun sequence (45095 bp)
Overview 1 RT 1: 4851-9913 bp Neighborhood of RT #1 [4851, 11274] RVT-GII RVT-GII Intron_maturas2 HNHc Spo0J Feature: gene Location: 4851-5069 bp Feature: gene Location: 5195-6043 bp Feature: gene Location: 6921-7586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6924-7581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6924-758 1 bp Feature: gene Location: 7616-8470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7622-7736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7622-7736 bp Feature: domain Description: Intron_maturas2 Location: 7805-8093 bp Feature: domain Description: Intron_maturas2 Location: 78 05-8 093 bp Feature: domain Description: HNHc Note: nucleases Location: 8261-8414 bp Feature: domain Description: HNHc Note: nucleases Location: 8 261-8 414 bp Feature: gene Location: 8424-8933 bp Feature: gene Location: 9109-11274 bp Feature: domain Description: Spo0J Location: 9148-9913 bp Feature: domain Description: Spo0J Location: 9148 -9913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Spo0J (COG1475)

Seq: JSBN01000058.1 Sphingomonas sp. Ant H11 contig_58, whole genome shotgun sequence (28127 bp)
Overview 1 RT 1: 21431-26078 bp Neighborhood of RT #1 [21431, 26078] AbiEi_4 RVT-GII RVT-GII Intron_maturas2 HNHc Feature: gene Location: 21431-21931 bp Feature: domain Description: AbiEi_4 Location: 21713-21779 bp Feature: domain Description: AbiEi_4 Location: 21713-21779 bp Feature: gene Location: 22000-22857 bp Feature: gene Location: 23443-24399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23713-24388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23713-24388 bp Feature: gene Location: 24402-25289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24414-24555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24414-24555 bp Feature: domain Description: Intron_maturas2 Location: 24624-24912 bp Feature: domain Description: Intron_maturas2 Location: 24624-249 12 bp Feature: domain Description: HNHc Note: nucleases Location: 25080-25233 bp Feature: domain Description: HNHc Note: nucleases Location: 25080-25233 bp Feature: gene Location: 25243-25752 bp Feature: gene Location: 25812-26078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEi_4 (pfam13338), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)