myRT

myRT report for GCA_000797655.1_Escherichia_coli_CVM_N36401PS_v._1.0

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Seq: JUCK01000060.1 (61051 bp)
Overview 1 RT 1: 26948-30377 bp Neighborhood of RT #1 [26948, 30451] ArgR RVT-GII GIIM RVT-GII CdiI_3 Ntox28 Feature: gene Location: 26948-27427 bp Ori: KHH74192.1 Feature: domain Description: ArgR Location: 26981-27413 bp Feature: domain Description: ArgR Location: 26981 -2741 3 bp Feature: gene Location: 27665-27883 bp Feature: gene Location: 28133-28945 bp Ori: KHH74194.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28142-28592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 42-28592 bp Feature: domain Description: GIIM Note: maturase Location: 28643-28808 bp Feature: domain Description: GIIM Note: maturase Location: 28643-28808 bp Feature: gene Location: 28942-29424 bp Ori: KHH74195.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29263-29350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29263-29350 bp Feature: gene Location: 29871-30257 bp Ori: KHH74196.1 Feature: domain Description: CdiI_3 Location: 29895-30171 bp Feature: domain Description: CdiI_3 Location: 29895-301 71 bp Feature: gene Location: 30254-30451 bp Ori: KHH74197.1 Feature: domain Description: Ntox28 Location: 30260-30377 bp Feature: domain Description: Ntox28 Location: 30260-30377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArgR (COG1438), RVT-GII, GIIM (pfam08388), CdiI_3 (pfam18616), Ntox28 (pfam15605)

Seq: JUCK01000101.1 (44770 bp)
Overview 1 RT 1: 2647-7349 bp Neighborhood of RT #1 [2647, 7363] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc DinI PRK10276 Feature: gene Location: 2647-2958 bp Feature: gene Location: 2955-3857 bp Ori: KHH71637.1 Feature: domain Description: DUF1281 Location: 3024-3552 bp Feature: domain Description: DUF12 81 Location: 302 4-3552 bp Feature: domain Description: DUF1281_C Location: 3558-3798 bp Feature: domain Description: DUF12 81_C Location: 3558-3798 bp Feature: gene Location: 3934-5658 bp Ori: KHH71638.1 Feature: domain Description: RVT_N Location: 3991-4228 bp Feature: domain Description: RVT_N Location: 3991-42 2 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4279-4927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 79-492 7 bp Feature: domain Description: YkfC Location: 5059-5215 bp Feature: domain Description: YkfC Location: 5059-52 15 bp Feature: domain Description: HNHc Note: nucleases Location: 5443-5602 bp Feature: domain Description: HNHc Note: nucleases Location: 5443-5602 bp Feature: gene Location: 6681-6929 bp Ori: KHH71639.1 Feature: domain Description: DinI Location: 6738-6918 bp Feature: domain Description: DinI Location: 6738-6918 bp Feature: gene Location: 6926-7363 bp Ori: KHH71640.1 Feature: domain Description: PRK10276 Location: 6983-7349 bp Feature: domain Description: PRK102 76 Location: 6983-7349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: JUCK01000033.1 (29674 bp)
Overview 1 RT 1: 25040-28933 bp Neighborhood of RT #1 [25040, 28933] PRK15011 COG3943 RVT-Retrons Feature: gene Location: 25040-26224 bp Ori: KHH78437.1 Feature: domain Description: PRK15011 Location: 25049-26222 bp Feature: domain Description: PRK15011 Location: 25049-26222 bp Feature: gene Location: 26606-26752 bp Ori: KHH78438.1 Feature: domain Description: COG3943 Location: 26609-26708 bp Feature: domain Description: COG3 943 Location: 26609-26708 bp Feature: gene Location: 27046-27996 bp Ori: KHH78439.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27145-27736 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27145-2773 6 bp Feature: gene Location: 27983-28933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15011 (sugar efflux transporter SetB), COG3943 (Uncharacterized conserved protein ), RVT-Retrons