myRT

myRT report for GCA_000798055.1_Escherichia_coli_CVM_N33922PS_v._1.0

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Seq: JUDB01000075.1 (4147 bp)
Overview 1 RT 1: 1-2264 bp Neighborhood of RT #1 [1, 2287] RVT-Retrons CspC Rop Feature: gene Location: 1-1047 bp Ori: KHI50684.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52-607 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52-607 bp Feature: gene Location: 1052-1255 bp Ori: KHI50685.1 Feature: domain Description: CspC Location: 1055-1250 bp Feature: domain Description: CspC Location: 1 055-1 250 bp Feature: gene Location: 2093-2287 bp Ori: KHI50686.1 Feature: domain Description: Rop Location: 2096-2264 bp Feature: domain Description: Rop Location: 2096-2264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CspC (COG1278), Rop (pfam01815)

Seq: JUDB01000017.1 (109448 bp)
Overview 1 RT 1: 87983-94360 bp Neighborhood of RT #1 [87983, 94380] XdhC PBP2_CrgA_like_5 RVT-UG8 RVT-UG3 PRK09678 Psu Feature: gene Location: 87983-88939 bp Ori: KHI56154.1 Feature: domain Description: XdhC Location: 88061-88916 bp Feature: domain Description: XdhC Location: 88061-88916 bp Feature: gene Location: 88918-89328 bp Ori: KHI56155.1 Feature: domain Description: PBP2_CrgA_like_5 Location: 88990-89302 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 88990-89302 bp Feature: gene Location: 89870-91888 bp Ori: KHI56156.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 90443-90896 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 90443-90896 bp Feature: gene Location: 91879-93156 bp Ori: KHI56157.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 92167-92662 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 92 167-92 662 bp Feature: gene Location: 93551-93823 bp Ori: KHI56158.1 Feature: domain Description: PRK09678 Location: 93560-93725 bp Feature: domain Description: PRK09678 Location: 93560-9372 5 bp Feature: gene Location: 93829-94380 bp Ori: KHI56159.1 Feature: domain Description: Psu Location: 93850-94360 bp Feature: domain Description: Psu Location: 93850-94360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XdhC (COG1975), PBP2_CrgA_like_5 (cd08474), RVT-UG8, RVT-UG3, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)