myRT

myRT report for GCA_000798175.1_Escherichia_coli_CVM_N41586PS_v._1.0

Download annotations/find similar RTs

Seq: JUBP01000040.1 (77050 bp)
Overview 1 RT 1: 21836-25718 bp Neighborhood of RT #1 [21836, 25723] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 21836-22552 bp Ori: KHG72652.1 Gene: rph Feature: domain Description: rph Location: 21839-22547 bp Feature: domain Description: rph Location: 21 839-22547 bp Feature: gene Location: 22618-23259 bp Ori: KHG72653.1 Gene: pyrE Feature: domain Description: pyrE Location: 22621-23254 bp Feature: domain Description: pyrE Location: 22621 -23254 bp Feature: gene Location: 23557-24516 bp Ori: KHG72654.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23692-24241 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23692-24241 bp Feature: gene Location: 24562-25158 bp Ori: KHG72655.1 Gene: slmA Feature: domain Description: slmA Location: 24568-25144 bp Feature: domain Description: slmA Location: 24568-251 44 bp Feature: gene Location: 25265-25723 bp Ori: KHG72656.1 Feature: domain Description: dut Location: 25271-25718 bp Feature: domain Description: dut Location: 25271 -2571 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: JUBP01000033.1 (77752 bp)
Overview 1 RT 1: 5620-13744 bp Neighborhood of RT #1 [5620, 13779] PRK11233 cbl RVT-Retrons AAA_15 DUF4917 Feature: gene Location: 5620-6537 bp Ori: KHG73315.1 Feature: domain Description: PRK11233 Location: 5623-6535 bp Feature: domain Description: PRK112 33 Location: 562 3-6535 bp Feature: gene Location: 6639-7589 bp Ori: KHG73316.1 Gene: cbl Feature: domain Description: cbl Location: 6642-7587 bp Feature: domain Description: cbl Location: 6642 -7587 bp Feature: gene Location: 7904-9004 bp Ori: KHG73317.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8084-8618 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8084-8618 bp Feature: gene Location: 9119-11365 bp Ori: KHG73318.1 Feature: domain Description: AAA_15 Location: 9122-10130 bp Feature: domain Description: AAA_15 Location: 912 2 -10130 bp Feature: gene Location: 12760-13779 bp Ori: KHG73319.1 Feature: domain Description: DUF4917 Location: 12820-13744 bp Feature: domain Description: DUF4917 Location: 12 82 0-13744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11233 (nitrogen assimilation transcriptional regulator; Provisional), cbl (PRK12679), RVT-Retrons, AAA_15 (pfam13175), DUF4917 (pfam16263)

Seq: JUBP01000026.1 (129516 bp)
Overview 1 RT 1: 33087-39090 bp Neighborhood of RT #1 [33087, 39107] Phage_int_SAM_5 INT_C_like_1 PRK09692 RVT-UG7 Psu Feature: gene Location: 33087-34421 bp Ori: KHG74577.1 Feature: domain Description: Phage_int_SAM_5 Location: 33456-33693 bp Feature: domain Description: Phage_int_SAM_5 Location: 3 3 456-3 3 693 bp Feature: domain Description: INT_C_like_1 Location: 33789-34305 bp Feature: domain Description: INT_C_like_1 Location: 3 3 789-3 43 05 bp Feature: gene Location: 34690-35874 bp Ori: KHG74578.1 Feature: domain Description: PRK09692 Location: 34696-35851 bp Feature: domain Description: PRK09692 Location: 3 4696-3 5851 bp Feature: gene Location: 35867-37495 bp Ori: KHG74579.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 36275-36704 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3 6275-3 6704 bp Feature: gene Location: 37492-38232 bp Feature: gene Location: 38535-39107 bp Ori: KHG74581.1 Feature: domain Description: Psu Location: 38553-39090 bp Feature: domain Description: Psu Location: 3 8553 -3 9090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: JUBP01000020.1 (2271 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 278-703 bp Feature: gene Location: 672-2180 bp Ori: KHG75265.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)