myRT

myRT report for GCA_000798575.1_Escherichia_coli_CVM_N36404PS_v._1.0

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Seq: JUCJ01000051.1 (52613 bp)
Overview 1 RT 1: 36841-41557 bp Neighborhood of RT #1 [36841, 41557] PRK10276 DinI RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 36841-37278 bp Ori: KHH63007.1 Feature: domain Description: PRK10276 Location: 36898-37264 bp Feature: domain Description: PRK1 0276 Location: 36898-37264 bp Feature: gene Location: 37275-37523 bp Ori: KHH63008.1 Feature: domain Description: DinI Location: 37332-37512 bp Feature: domain Description: DinI Location: 37332-3751 2 bp Feature: gene Location: 38546-40270 bp Ori: KHH63009.1 Feature: domain Description: RVT_N Location: 38603-38840 bp Feature: domain Description: RVT_N Location: 38603-38840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38891-39539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38891 -39539 bp Feature: domain Description: YkfC Location: 39671-39827 bp Feature: domain Description: YkfC Location: 39671 -39827 bp Feature: domain Description: HNHc Note: nucleases Location: 40055-40214 bp Feature: domain Description: HNHc Note: nucleases Location: 40055-4021 4 bp Feature: gene Location: 40347-41249 bp Ori: KHH63010.1 Feature: domain Description: DUF1281 Location: 40416-40944 bp Feature: domain Description: DUF1 281 Location: 4041 6-40944 bp Feature: domain Description: DUF1281_C Location: 40950-41190 bp Feature: domain Description: DUF1 281 _C Location: 40950-41 1 90 bp Feature: gene Location: 41246-41557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DinI (pfam06183), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: JUCJ01000020.1 (161039 bp)
Overview 1 RT 1: 16116-23482 bp Neighborhood of RT #1 [16116, 23499] P Q RVT-AbiP2 Phage_GPA DUF5405 Feature: gene Location: 16116-17888 bp Ori: KHH68088.1 Feature: domain Description: P Location: 16143-17874 bp Feature: domain Description: P Location: 16143-17874 bp Feature: gene Location: 17888-18922 bp Ori: KHH68089.1 Feature: domain Description: Q Location: 17891-18917 bp Feature: domain Description: Q Location: 17891-18917 bp Feature: gene Location: 19298-20845 bp Ori: KHH68221.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 19715-20168 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 19715-2 0168 bp Feature: gene Location: 20949-23234 bp Ori: KHH68090.1 Feature: domain Description: Phage_GPA Location: 21348-22335 bp Feature: domain Description: Phage_GPA Location: 2 1348-2 2 335 bp Feature: gene Location: 23224-23499 bp Ori: KHH68091.1 Feature: domain Description: DUF5405 Location: 23242-23482 bp Feature: domain Description: DUF5405 Location: 2 32 42 -2 3482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-AbiP2, Phage_GPA (pfam05840), DUF5405 (pfam17399)

Seq: JUCJ01000014.1 (406672 bp)
Overview 1 RT 1: 168066-171495 bp Neighborhood of RT #1 [168066, 171569] ArgR RVT-GII GIIM RVT-GII CdiI_3 Ntox28 Feature: gene Location: 168066-168545 bp Ori: KHH70242.1 Feature: domain Description: ArgR Location: 168099-168531 bp Feature: domain Description: ArgR Location: 168099-16853 1 bp Feature: gene Location: 168783-169001 bp Feature: gene Location: 169251-170063 bp Ori: KHH70244.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169260-169710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169260-169710 bp Feature: domain Description: GIIM Note: maturase Location: 169761-169926 bp Feature: domain Description: GIIM Note: maturase Location: 169761-169926 bp Feature: gene Location: 170060-170542 bp Ori: KHH70245.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170381-170468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1703 81-170468 bp Feature: gene Location: 170989-171375 bp Ori: KHH70246.1 Feature: domain Description: CdiI_3 Location: 171013-171289 bp Feature: domain Description: CdiI_3 Location: 171013 -171289 bp Feature: gene Location: 171372-171569 bp Ori: KHH70247.1 Feature: domain Description: Ntox28 Location: 171378-171495 bp Feature: domain Description: Ntox28 Location: 1713 78-171495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArgR (COG1438), RVT-GII, GIIM (pfam08388), CdiI_3 (pfam18616), Ntox28 (pfam15605)

Seq: JUCJ01000002.1 (105701 bp)
Overview 1 RT 1: 61483-67860 bp Neighborhood of RT #1 [61483, 67880] XdhC PBP2_CrgA_like_5 RVT-UG8 RVT-UG3 PRK09678 Psu Feature: gene Location: 61483-62439 bp Ori: KHH72656.1 Feature: domain Description: XdhC Location: 61561-62416 bp Feature: domain Description: XdhC Location: 61561-624 16 bp Feature: gene Location: 62418-62828 bp Ori: KHH72657.1 Feature: domain Description: PBP2_CrgA_like_5 Location: 62490-62802 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 624 90-62802 bp Feature: gene Location: 63370-65388 bp Ori: KHH72658.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 63943-64396 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 6394 3-64 396 bp Feature: gene Location: 65379-66656 bp Ori: KHH72659.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 65667-66162 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 65667-66162 bp Feature: gene Location: 67051-67323 bp Ori: KHH72660.1 Feature: domain Description: PRK09678 Location: 67060-67225 bp Feature: domain Description: PRK09678 Location: 67060-67225 bp Feature: gene Location: 67329-67880 bp Ori: KHH72661.1 Feature: domain Description: Psu Location: 67350-67860 bp Feature: domain Description: Psu Location: 67350-67860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XdhC (COG1975), PBP2_CrgA_like_5 (cd08474), RVT-UG8, RVT-UG3, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)