myRT

myRT report for GCA_000798635.2_ASM79863v2

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Seq: JTHJ02000187.1 Photorhabdus luminescens NBAII HiPL101 Chromous2_raw_6_trimmed_contig_187, whole genome shotgun sequence (1921 bp)
Overview 1 RT 1: 3-1456 bp Neighborhood of RT #1 [3, 1818] RVT-GII Feature: gene Location: 3-662 bp Feature: gene Location: 361-1818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769-1456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769-1 456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JTHJ02000206.1 Photorhabdus luminescens NBAII HiPL101 Chromous2_raw_6_trimmed_contig_206, whole genome shotgun sequence (22134 bp)
Overview 1 RT 1: 8210-12977 bp Neighborhood of RT #1 [8210, 12977] DppF RVT-Retrons Feature: gene Location: 8210-9241 bp Feature: gene Location: 9638-10978 bp Feature: domain Description: DppF Location: 9686-10424 bp Feature: domain Description: DppF Location: 9686-1042 4 bp Feature: gene Location: 10982-11968 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11129-11699 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1112 9-11699 bp Feature: gene Location: 12244-12372 bp Feature: gene Location: 12846-12977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DppF (COG1124), RVT-Retrons

Seq: JTHJ02000244.1 Photorhabdus luminescens NBAII HiPL101 Chromous2_raw_6_trimmed_contig_244, whole genome shotgun sequence (13593 bp)
Overview 1 RT 1: 11253-13241 bp Neighborhood of RT #1 [11253, 13534] PRK09692 RVT-UG2 Feature: gene Location: 11253-11570 bp Feature: domain Description: PRK09692 Location: 11268-11466 bp Feature: domain Description: PRK09692 Location: 11268-11466 bp Feature: gene Location: 11841-12188 bp Feature: gene Location: 12209-13534 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 12458-13241 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 12458-13 241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG2

Seq: JTHJ02000071.1 Photorhabdus luminescens NBAII HiPL101 Chromous2_raw_6_trimmed_contig_71, whole genome shotgun sequence (13644 bp)
Overview 1 RT 1: 1439-6730 bp Neighborhood of RT #1 [1439, 6747] RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 1439-1726 bp Feature: gene Location: 1997-2155 bp Feature: gene Location: 2339-3991 bp Feature: domain Description: RVT_N Location: 2390-2633 bp Feature: domain Description: RVT_N Location: 2390-2633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2678-3323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2678-3323 bp Feature: domain Description: GIIM Note: maturase Location: 3377-3608 bp Feature: domain Description: GIIM Note: maturase Location: 3377-3608 bp Feature: domain Description: HNHc Note: nucleases Location: 3824-3980 bp Feature: domain Description: HNHc Note: nucleases Location: 3824 -3980 bp Feature: gene Location: 4811-5011 bp Feature: gene Location: 5101-6747 bp Feature: domain Description: groEL Location: 5107-6730 bp Feature: domain Description: groEL Location: 5107-6730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)