myRT

myRT report for GCA_000799685.1_ASM79968v1

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Seq: JUHF01000009.1 Agrobacterium rhizogenes strain CF263 EW85DRAFT_scaffold00002.2_C, whole genome shotgun sequence (966535 bp)
Overview 1 RT 1: 239534-243132 bp Neighborhood of RT #1 [239534, 243188] Rve RVT-GII GIIM Rve Crp Feature: gene Location: 239534-239830 bp Feature: domain Description: Rve Location: 239561-239780 bp Feature: domain Description: Rve Location: 239561 -239780 bp Feature: gene Location: 240028-240204 bp Feature: gene Location: 240269-241573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240518-241175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24051 8-241 1 75 bp Feature: domain Description: GIIM Note: maturase Location: 241256-241487 bp Feature: domain Description: GIIM Note: maturase Location: 241 256-241 487 bp Feature: gene Location: 241612-242097 bp Feature: domain Description: Rve Location: 241642-242023 bp Feature: domain Description: Rve Location: 241 642-242023 bp Feature: gene Location: 242496-243188 bp Feature: domain Description: Crp Location: 242526-243132 bp Feature: domain Description: Crp Location: 242526-2431 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), Crp (pfam00325)

Seq: JUHF01000016.1 Agrobacterium rhizogenes strain CF263 EW85DRAFT_scaffold00009.9_C, whole genome shotgun sequence (142171 bp)
Overview 1 RT 1: 95855-98656 bp Neighborhood of RT #1 [95855, 98697] RVT-Retrons Arc Arc Feature: gene Location: 95855-96025 bp Feature: gene Location: 96205-96969 bp Feature: gene Location: 96971-97954 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97076-97661 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97076-97661 bp Feature: gene Location: 98024-98422 bp Feature: domain Description: Arc Location: 98048-98168 bp Feature: domain Description: Arc Location: 98048-98168 bp Feature: gene Location: 98518-98697 bp Feature: domain Description: Arc Location: 98548-98656 bp Feature: domain Description: Arc Location: 98548-98656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arc (pfam03869)

Seq: JUHF01000001.1 Agrobacterium rhizogenes strain CF263 EW85DRAFT_scaffold00010.10_C, whole genome shotgun sequence (135772 bp)
Overview 1 RT 1: 70060-73784 bp Neighborhood of RT #1 [70060, 73813] HTH_XRE RVT-Retrons COG4530 AroA Feature: gene Location: 70060-70224 bp Feature: gene Location: 70264-70554 bp Feature: domain Description: HTH_XRE Location: 70276-70435 bp Feature: domain Description: HTH_XRE Location: 70276-7043 5 bp Feature: gene Location: 70555-71460 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 70702-71236 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 70702-7123 6 bp Feature: gene Location: 71796-72215 bp Feature: domain Description: COG4530 Location: 71838-72213 bp Feature: domain Description: COG453 0 Location: 7183 8-72213 bp Feature: gene Location: 72449-73813 bp Feature: domain Description: AroA Location: 72488-73784 bp Feature: domain Description: AroA Location: 72488-73 784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, COG4530 (Uncharacterized protein ), AroA (COG0128)

Seq: JUHF01000002.1 Agrobacterium rhizogenes strain CF263 EW85DRAFT_scaffold00011.11_C, whole genome shotgun sequence (95736 bp)
Overview 1 RT 1: 63938-67269 bp Neighborhood of RT #1 [63938, 67301] Tra5 RVT-GII GIIM PHA02517 Feature: gene Location: 63938-64159 bp Feature: gene Location: 64190-64567 bp Feature: domain Description: Tra5 Location: 64202-64556 bp Feature: domain Description: Tra5 Location: 64 202-64 556 bp Feature: gene Location: 64716-66245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64989-65724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 989-65724 bp Feature: domain Description: GIIM Note: maturase Location: 65796-66024 bp Feature: domain Description: GIIM Note: maturase Location: 65796-66024 bp Feature: gene Location: 66414-66620 bp Feature: gene Location: 66861-67301 bp Feature: domain Description: PHA02517 Location: 66927-67269 bp Feature: domain Description: PHA02517 Location: 66927-67269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)